PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022135534.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family RAV
Protein Properties Length: 341aa    MW: 39158.5 Da    PI: 9.2923
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022135534.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.31e-094592154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                    s++kGV    ++g W A+I+       + +r++lg+f ++++Aa a++ a+ +++
  XP_022135534.1 45 SKFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSENDAAMAYDSAAIRIR 92
                    799***6.666899****999......44**********************9987 PP
2B385.44.9e-27168268187
                     EEEE-..-HHHHTT-EE--HHH.HTT...........---........--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkke......esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                     f+k+ltpsdv+k++rlv+pkk+a ++           +   e      ++++l++ d+  r+W+++++y+k+s++yv+t+GW++Fvk+++L+++D
  XP_022135534.1 168 FQKELTPSDVGKLNRLVIPKKYAVKYfppisacekenE---EgiidddRDVQLVFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLRAND 259
                     99****************************99985440...2455555888999999999*********************************** PP

                     EEEEEE-SS CS
              B3  79 fvvFkldgr 87 
                     ++ F+l + 
  XP_022135534.1 260 TIAFYLCEA 268
                     *****8754 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MMKQEWPSMI SKIRVNAIAE GSDSSCITCP FPANGCRRLG RSLTSKFKGV VPQQNGHWGA  60
QIYANHQRIW LGTFKSENDA AMAYDSAAIR IRSGDCHRNF PWTKFTIEEP NFQKLYTTEA  120
LLNMLKDGSY RTKFAEYLRD RSESSQSSVG PSAGKMHKNG GTSIKQLFQK ELTPSDVGKL  180
NRLVIPKKYA VKYFPPISAC EKENEEGIID DDRDVQLVFF DKMMRQWKFR YCYWKSSQSY  240
VFTRGWNRFV KEKQLRANDT IAFYLCEATK ASATKTTFCV VDVKNRHNSG SSIENNIQSC  300
EMQLDFLRDE IEESVSPKQV NNEIKDDAEV KSFKLFGVHI K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-108RAV family protein