PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022135429.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C2H2

Protein Properties

Length: 586aa MW: 67066.3 Da PI: 5.727

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022135429.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	557	575	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C+ Cg+ F ++ L++H+ XP_022135429.1 557 SCETCGEQFESRNKLHKHL 575 6*****************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence
MASGKRCHYE VLGLHLDCTA DEIRSAYRKL ALQRHPDKLV QSGLSQADAT AQFQELQHAY 60 EVLSDPKERA WYDSHRSQIL FSDAASVNSN SVVPNLFPFF SNTVYSGYSD SGRGFYKIYA 120 DLFDTIYGNE INFAKKLGLR LDVVREAPVM GNVDSPYTQV TAFYNYWLGF CTVMDFCWVD 180 QYDVMAGPNR KSRRLMEEDN KKLRKKAKRE YNETVRGLAE FVKKRDKRVI DMAMKRNLEM 240 EKKKQEERER KKKLEREKLE KLRAYEEPDW AKVEEVEEDA GDEFEEENKK EKELYCVLCG 300 KKFKSEKQWK NHEQSKKHKE KVAEFRESLD DEDESEGFVD EGEAEAEETL LDDEMDKLGE 360 QFKESFDVKI EETESGPELS GSEHTDVHEI DRTDMVAEAL GLDDDDELDV LEAMAAGLRN 420 RKNAASVQQP KASSVKTRVE NESDELSPGE YENGKRGRRN RRAKKKGKGN DEPMNETDSQ 480 NDKNIGDDTS HRHDSPSHSS GNKESSDKGA SELAKEQRTS SKPADRKAVV QNDMKTNPRH 540 SSKGKKSKAT TKDSANSCET CGEQFESRNK LHKHLGATGH AALKYR

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence

MASGKRCHYE VLGLHLDCTA DEIRSAYRKL ALQRHPDKLV QSGLSQADAT AQFQELQHAY  60
EVLSDPKERA WYDSHRSQIL FSDAASVNSN SVVPNLFPFF SNTVYSGYSD SGRGFYKIYA  120
DLFDTIYGNE INFAKKLGLR LDVVREAPVM GNVDSPYTQV TAFYNYWLGF CTVMDFCWVD  180
QYDVMAGPNR KSRRLMEEDN KKLRKKAKRE YNETVRGLAE FVKKRDKRVI DMAMKRNLEM  240
EKKKQEERER KKKLEREKLE KLRAYEEPDW AKVEEVEEDA GDEFEEENKK EKELYCVLCG  300
KKFKSEKQWK NHEQSKKHKE KVAEFRESLD DEDESEGFVD EGEAEAEETL LDDEMDKLGE  360
QFKESFDVKI EETESGPELS GSEHTDVHEI DRTDMVAEAL GLDDDDELDV LEAMAAGLRN  420
RKNAASVQQP KASSVKTRVE NESDELSPGE YENGKRGRRN RRAKKKGKGN DEPMNETDSQ  480
NDKNIGDDTS HRHDSPSHSS GNKESSDKGA SELAKEQRTS SKPADRKAVV QNDMKTNPRH  540
SSKGKKSKAT TKDSANSCET CGEQFESRNK LHKHLGATGH AALKYR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	227	RKSRRLMEEDNKKLRKKAKREYNETVRGLAEFVKKRDK
2	201	209	KKLRKKAKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-153	C2H2 family protein