PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022134972.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family ARF
Protein Properties Length: 969aa    MW: 106277 Da    PI: 5.1493
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022134972.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.43.3e-24155256199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        + ++++ ++l+++d++ + W++++iyr+k++r++lt+GW+ Fv a++L++gD+v+F   +++
  XP_022134972.1 155 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytM-QPPN-QELVVRDLHDNIWTFRHIYRGKPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDE 245
                     99*********************999*****954.5444.49************************************************..457 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++v+r+
  XP_022134972.1 246 KSQLMIGVRRA 256
                     7778****997 PP
2Auxin_resp113.42e-37281364183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++k ++ +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  XP_022134972.1 281 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYgTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 364
                     79*********************************99*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 969 aa     Download sequence    
MGSVEEKIKT TGGGVGGGGL IINGPQTSLF DEMKLLKEMQ DQTGARKAIN SELWHACAGP  60
LVSLPHVGSL VFYFPQGHSE QVAVSTKRTA TSQIPNYPNL PSQLMCQVQN VTLHADKDSD  120
EIYAQMSLQP VNSEKDVFLV PDFGLRPSKH PNEFFCKTLT ASDTSTHGGF SVPRRAAEKL  180
FPPLDYTMQP PNQELVVRDL HDNIWTFRHI YRGKPKRHLL TTGWSLFVGA KRLRAGDSVL  240
FIRDEKSQLM IGVRRANRQQ TTLPSSVLSA DSMHIGVLAA AAHAAANRSP FTIFYNPRAC  300
PSEFVIPLAK YRKCVYGTQL SAGMRFGMMF ETEESGKRRY MGTIVGISDL DPLRWPGSKW  360
RNLQVEWDEP GCCDKQSRVS SWEIETPESL FIFPSLTSGL KRPLHSGFLA GETDWGSLVK  420
RPVLRVPENV RGDLSYAAPT LCSEPLMKML LRPQMVNLHG GATTQQDSVN NLVKLQDMKG  480
MQPIINPKMQ QQQQQLISSE TASPQNQNHH HPAPTPTQSD AINSTSSPET NLPGNVHASA  540
AIESEAPTGA DVVDKPKYER HLSTNESNNP LPPVGDCGEE KLSGNDVNMQ TLVNQLSFVN  600
QNQIPMMQLQ PVSWPIQQPQ LESLIPHPQP IDMPQPEFTN SNGLISSLDG DGCLINPSCL  660
PLPGVMRSPG SLSMLGLQES STMFPEALNF PLPSTTQDMW DPLNSIRFPS QTNHLVSFSH  720
PDASNLNCMA VNANAMRDVS DESNNQSGIY SCSNLEISNC GSALVDPAVS STILDDYCTF  780
KDADFPNPSD CLAGNFSSSQ DVQSQITCAS LGDSQAFSRQ EYHDNSGGTS SCNVDFDEGS  840
LLQNGSWKQV VPPMRTYTKV QKAGSVGRSI DVTSFKNYDE LCSAIECMFG LEGLLNDPRG  900
SGWKLVYVDY ENDVLLIGDD PWEEFVSCVR CIRILSPSEV QQMSEEGMKL LNSAMMQGVN  960
CSISEGGGA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein