PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022134559.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C2H2

Protein Properties

Length: 520aa MW: 57701.9 Da PI: 9.5261

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022134559.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00043	429	451	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp+C k+F + L H r+H XP_022134559.1 429 HKCPICEKVFASGQALGGHKRSH 451 79*****************9999 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MEANLGARHV CKLCNKSFPC GRSLGGHMRS HLTNNLADND EKHSRTSFQL ANYSAGSISN 60 MEETDLEAGN LAGFGYGLRK NPKKTQKLEF LSEESSLPEK FCRECGKGFQ SWKALFGHMK 120 CHSERAVVSS SQELEEPDSH ITDAKQKLVM DIQSDNETEA PNRRKRSRRR RTAQLGTAIG 180 TANSTSFSLA TNSSSVSEME QEQEVAISLM LLSMDVGNWV NFNSPAESSD NNSKFLEAPS 240 VVESKTSVSN GGELVKSNKR LKGKKVEFEG KHSEQSSSGF TTKGKTIKKS LPDQRAGSKA 300 SLKRNDQNQS RLNSEMFLKS PKKTLAEFWD SKIYKKPKKR SKFECDICNK IFHSYQALGG 360 HRASHKKLKG CYLASAMEEE EEEMGSESSA EIAISANPTA ESKLSKAHNN GGRSYEEMGS 420 QIPKKSSKHK CPICEKVFAS GQALGGHKRS HLVSGSDAKN RETVEIRKKF PEVRGFLDLN 480 LPPEPVEREI KDHNIGSLKP WWVAASEHKH EALVNVGFHI

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MEANLGARHV CKLCNKSFPC GRSLGGHMRS HLTNNLADND EKHSRTSFQL ANYSAGSISN  60
MEETDLEAGN LAGFGYGLRK NPKKTQKLEF LSEESSLPEK FCRECGKGFQ SWKALFGHMK  120
CHSERAVVSS SQELEEPDSH ITDAKQKLVM DIQSDNETEA PNRRKRSRRR RTAQLGTAIG  180
TANSTSFSLA TNSSSVSEME QEQEVAISLM LLSMDVGNWV NFNSPAESSD NNSKFLEAPS  240
VVESKTSVSN GGELVKSNKR LKGKKVEFEG KHSEQSSSGF TTKGKTIKKS LPDQRAGSKA  300
SLKRNDQNQS RLNSEMFLKS PKKTLAEFWD SKIYKKPKKR SKFECDICNK IFHSYQALGG  360
HRASHKKLKG CYLASAMEEE EEEMGSESSA EIAISANPTA ESKLSKAHNN GGRSYEEMGS  420
QIPKKSSKHK CPICEKVFAS GQALGGHKRS HLVSGSDAKN RETVEIRKKF PEVRGFLDLN  480
LPPEPVEREI KDHNIGSLKP WWVAASEHKH EALVNVGFHI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	335	369	KKPKKRSKFECDICNKIFHSYQALGGHRASHKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	1e-27	C2H2 family protein