PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022134456.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MYB

Protein Properties

Length: 416aa MW: 45570.4 Da PI: 6.5099

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022134456.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl XP_022134456.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.3	3e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_022134456.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNHWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWINY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNHWNT HLKKRLAKMG 120 IDPVTHKPKN DALLTGDGQS KSAANLSHIA QWESARLEAE ARLVRESRLR SSHSHSLQQL 180 GNPPCFAPSS SSTSTSSQLF TKTEPPGMPS RSLDALKACY NGWSRSTEGN GGSLRSGIGG 240 DLESPTSTLT FSEHVPPIMA STGTGETSIA MIEFVGSSSS CEGGIMRSGE GEREWKEEGF 300 GNSTQLPEYK EGFENSMPFT SHDMTLSIEA TWTAESLRTS NNNNGHVHGA RQEIAQDQGF 360 TNLLLNNIDE RSLSDGGGDD SENGSGSASD CYEDNKNYWN SILNLVDSSP SDSSMF

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNHWNT HLKKRLAKMG  120
IDPVTHKPKN DALLTGDGQS KSAANLSHIA QWESARLEAE ARLVRESRLR SSHSHSLQQL  180
GNPPCFAPSS SSTSTSSQLF TKTEPPGMPS RSLDALKACY NGWSRSTEGN GGSLRSGIGG  240
DLESPTSTLT FSEHVPPIMA STGTGETSIA MIEFVGSSSS CEGGIMRSGE GEREWKEEGF  300
GNSTQLPEYK EGFENSMPFT SHDMTLSIEA TWTAESLRTS NNNNGHVHGA RQEIAQDQGF  360
TNLLLNNIDE RSLSDGGGDD SENGSGSASD CYEDNKNYWN SILNLVDSSP SDSSMF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-96	MYB family protein