PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022134168.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 286aa MW: 32034.1 Da PI: 6.6945

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022134168.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	42.4	1.1e-13	218	242	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C+yGd C+FaHg XP_022134168.1 218 KTELCNKWRETGGCPYGDHCRFAHG 242 8***********************9 PP
2	zf-CCCH	18.3	4.2e-06	255	280	1	26
--S---SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHg 26 ykt Cr ++ G tC+yG rC+F H+ XP_022134168.1 255 YKTQMCRMVLA-GdTCPYGHRCHFRHS 280 899******.55********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence
MEEEDMSPPL PSSLPATPPE FENFGVHFAS MYHSIFPPLS TLSLPSSLSF TPSPCSSAVD 60 DDDHSHSHTD ELLFEAGLVL ESRELWEQHD LCLRRLREVS KEADYLRREN AQIRSANAEL 120 VKLVSSKIGV DDIISPTSVI RNNNNQFEGM IRNRRRVIAL PNSISVRSAT PATAPLLNIQ 180 SRRVCAPASG GGGSGKREEE EAAAAAMELE LYNQGMAKTE LCNKWRETGG CPYGDHCRFA 240 HGVEELRPVI RHPRYKTQMC RMVLAGDTCP YGHRCHFRHS LNHRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	9e-57	C3H family protein