PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022133996.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MYB

Protein Properties

Length: 557aa MW: 61507.1 Da PI: 5.3506

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022133996.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.7	2.7e-18	38	85	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ ++ g+ R++k+c++rw ++l XP_022133996.1 38 KGPWTSAEDAILVDYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 85 79******************************************9986 PP
2	Myb_DNA-binding	53.4	6e-17	91	134	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++l++++++++G++ W++ a++++ gRt++++k++w++ XP_022133996.1 91 KGAFTAEEEQLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 134 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MRRTKNESED NIPSKDQILS PLADEDSGGN ANGIVLKKGP WTSAEDAILV DYVKKHGEGN 60 WNAVQKHSGL SRCGKSCRLR WANHLRPNLK KGAFTAEEEQ LIIELHAKMG NKWARMAAHL 120 PGRTDNEIKN YWNTRIKRRQ RAGLPLYPPE VCLRAWQASQ QTQDTGGSNI GDKDRHDLLR 180 ANSYDIIPDV TFQSLKHQAV PTFSYLNELP DISSCMMKRG LDSSQYCNFM QSTAHRQKRF 240 RESTSLFPGP DGSVKTPFHQ FEDNSYDQVA QSYGSPFPLD PNPTSKNAMS FGSFEGSHSL 300 TNGNSSASQH SKETEKLELP SLQYTETDLS SWDPPIPPGM FEPVDPFIQS PPTFMLGSDC 360 PSPRNSGLLE ALIYESKTIG CPKNHPSDKN SNSCSVTPGD VTDSYNMTAS KAELDDYTEA 420 ASPFGHSTSS LFSECTPISA TGSSYDDPTL TEAFSGSNVK SEPVDHTWTP DREKEAKSAL 480 EFPRPDALLA SDWPERSSGF VKDTTNMTDT ITMLLGDDLA ADYKHLPNGI STSHSGWGLD 540 SCSWNNMPAV CQMADLP

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MRRTKNESED NIPSKDQILS PLADEDSGGN ANGIVLKKGP WTSAEDAILV DYVKKHGEGN  60
WNAVQKHSGL SRCGKSCRLR WANHLRPNLK KGAFTAEEEQ LIIELHAKMG NKWARMAAHL  120
PGRTDNEIKN YWNTRIKRRQ RAGLPLYPPE VCLRAWQASQ QTQDTGGSNI GDKDRHDLLR  180
ANSYDIIPDV TFQSLKHQAV PTFSYLNELP DISSCMMKRG LDSSQYCNFM QSTAHRQKRF  240
RESTSLFPGP DGSVKTPFHQ FEDNSYDQVA QSYGSPFPLD PNPTSKNAMS FGSFEGSHSL  300
TNGNSSASQH SKETEKLELP SLQYTETDLS SWDPPIPPGM FEPVDPFIQS PPTFMLGSDC  360
PSPRNSGLLE ALIYESKTIG CPKNHPSDKN SNSCSVTPGD VTDSYNMTAS KAELDDYTEA  420
ASPFGHSTSS LFSECTPISA TGSSYDDPTL TEAFSGSNVK SEPVDHTWTP DREKEAKSAL  480
EFPRPDALLA SDWPERSSGF VKDTTNMTDT ITMLLGDDLA ADYKHLPNGI STSHSGWGLD  540
SCSWNNMPAV CQMADLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-126	MYB family protein