 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_022133114.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
|
||||||||
| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 222aa MW: 25731.3 Da PI: 9.9202 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 62 | 9.1e-20 | 63 | 116 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
++++++eq+e Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+
XP_022133114.1 63 KRKLSREQVELLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 116
5689************************************************95 PP
| |||||||
| 2 | HD-ZIP_I/II | 116.4 | 1.7e-37 | 62 | 153 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
kkr+ls+eqv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+l +y++Lk+a+d+l+ ++++L++++ +L+eel+e
XP_022133114.1 62 KKRKLSREQVELLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLQDEYSTLKKAHDSLVLDKSHLQSQMMKLKEELME 153
9***************************************************************************************9986 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 222 aa Download sequence |
MAAVNLRPQP DNNAILISQL YNHAEIHSRV LPQPQPGAVA AEGNKAGRRR RRKSKGKEGG 60 LKKRKLSREQ VELLEMNFGN EHKLESERKD RLASELGLDP RQVAVWFQNR RARWKNKKLQ 120 DEYSTLKKAH DSLVLDKSHL QSQMMKLKEE LMEAKREIKQ LVERSEGISS NSRSSSVTMD 180 LEGAQPPFLG ELFVEGYEDV FYYMQMQDNN YTQGIDWLNL YM |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 48 | 65 | RRRRRKSKGKEGGLKKRK |
| 2 | 49 | 66 | RRRRKSKGKEGGLKKRKL |
| 3 | 49 | 66 | RRRRRKSKGKEGGLKKRK |
| 4 | 50 | 55 | RRRKSK |
| 5 | 50 | 67 | RRRRKSKGKEGGLKKRKL |
| 6 | 50 | 67 | RRRRRKSKGKEGGLKKRK |
| 7 | 51 | 68 | RRRRKSKGKEGGLKKRKL |
| 8 | 51 | 68 | RRRRRKSKGKEGGLKKRK |
| 9 | 52 | 69 | RRRRKSKGKEGGLKKRKL |
| 10 | 112 | 120 | ARWKNKKLQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G36740.1 | 3e-50 | HD-ZIP family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|