PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022132986.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

GRF

Protein Properties

Length: 568aa MW: 61711.7 Da PI: 8.2957

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022132986.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.7	2.3e-24	224	268	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_022132986.1 224 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 268 79****************************************985 PP
2	QLQ	57.8	3.3e-20	155	191	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l++KyL++n+PvP++Ll +++k XP_022132986.1 155 GPFTPSQWIELEHQALIFKYLSSNVPVPSNLLIPLKK 191 59*******************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence
MDFGVVGLDS FVDSSDAPSP HPAADPETKL KNLGSVFSKQ DRSGFVDDDW RNSKIPKTEA 60 VSASKTMPLH QGFPLLRSNT LLSSDGRQKE HMLSFSSVKS ETSLPSKDSD LVPRNAQASI 120 FHYHQQKPSV YSRNTGCVSG SYSGSMHGPV AGIRGPFTPS QWIELEHQAL IFKYLSSNVP 180 VPSNLLIPLK KSLYPYGLTS SSAGSLPPNT RWGSFHLGFS GNTDPEPGRC RRTDGKKWRC 240 SRDAVADQKY CERHINRGRH RSRKPVEGQT GHSAPGTTNP TAMVATMTLS PVMPSGGASN 300 NHPIIQHQLK SLHPGAASNP ADAPVNRLIN KETVCSRVQE PGGLSRMSST VNLISSNDKS 360 GVKQEISLGE STQSEFGLVS TDSLLNPSQR GSYANPKNYD SFLIFNDQET QDQDQHPLRQ 420 FFEDWPKDQS SRSVMTWPEE FKSDWTQLSM SIPMSDFSSS SSSPTHEKLA QSPLRLSREL 480 EPIQMNLGVS RNDGELVQKQ SNQIAMSWGS SMGGPLGEAL TNGSSCVKAS KVPPSLNLLG 540 EGWDGSQLGS SPTGVLQKAT FCSLSNSS

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence

MDFGVVGLDS FVDSSDAPSP HPAADPETKL KNLGSVFSKQ DRSGFVDDDW RNSKIPKTEA  60
VSASKTMPLH QGFPLLRSNT LLSSDGRQKE HMLSFSSVKS ETSLPSKDSD LVPRNAQASI  120
FHYHQQKPSV YSRNTGCVSG SYSGSMHGPV AGIRGPFTPS QWIELEHQAL IFKYLSSNVP  180
VPSNLLIPLK KSLYPYGLTS SSAGSLPPNT RWGSFHLGFS GNTDPEPGRC RRTDGKKWRC  240
SRDAVADQKY CERHINRGRH RSRKPVEGQT GHSAPGTTNP TAMVATMTLS PVMPSGGASN  300
NHPIIQHQLK SLHPGAASNP ADAPVNRLIN KETVCSRVQE PGGLSRMSST VNLISSNDKS  360
GVKQEISLGE STQSEFGLVS TDSLLNPSQR GSYANPKNYD SFLIFNDQET QDQDQHPLRQ  420
FFEDWPKDQS SRSVMTWPEE FKSDWTQLSM SIPMSDFSSS SSSPTHEKLA QSPLRLSREL  480
EPIQMNLGVS RNDGELVQKQ SNQIAMSWGS SMGGPLGEAL TNGSSCVKAS KVPPSLNLLG  540
EGWDGSQLGS SPTGVLQKAT FCSLSNSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-104	GRF family protein