PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022131271.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

bHLH

Protein Properties

Length: 380aa MW: 40790.3 Da PI: 4.8737

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022131271.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.9	2.7e-16	201	247	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq XP_022131271.1 201 VHNMSEKRRRRRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 247 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MADLYGTSPS SDVGLPHDPE DFSSLINQHL LTASSASSPA SCVSFKNRFM PLLHSQPPWH 60 PSSLFSRRPE PAAGVSCMLD FPEDRLQSSR VLNHAFSDCS VGDVRFADGS YVAVNSTCGG 120 GKLSDPGDLV SIVAKESSDN AFSSSGAVDS DSNAPLKRRG LSSENDLGDF SCDSEGGDVP 180 DVPSSTDLPR SSSKRSRSAE VHNMSEKRRR RRINEKMKAL QNLIPNSNKT DKASMLDEAI 240 EYLKQLQLQV QMLSMRNGLS LQPMCLPGML QPIPLPQMGL DFDVGNAFLT SRKGIDASSS 300 GNEGCPLQST FNLSNKCSIS DQSIAIPSVP NTTTSETTFG FEPAIQAYDG QFDLSANFKD 360 ARPTTQLDCA RTGKDSADAS

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MADLYGTSPS SDVGLPHDPE DFSSLINQHL LTASSASSPA SCVSFKNRFM PLLHSQPPWH  60
PSSLFSRRPE PAAGVSCMLD FPEDRLQSSR VLNHAFSDCS VGDVRFADGS YVAVNSTCGG  120
GKLSDPGDLV SIVAKESSDN AFSSSGAVDS DSNAPLKRRG LSSENDLGDF SCDSEGGDVP  180
DVPSSTDLPR SSSKRSRSAE VHNMSEKRRR RRINEKMKAL QNLIPNSNKT DKASMLDEAI  240
EYLKQLQLQV QMLSMRNGLS LQPMCLPGML QPIPLPQMGL DFDVGNAFLT SRKGIDASSS  300
GNEGCPLQST FNLSNKCSIS DQSIAIPSVP NTTTSETTFG FEPAIQAYDG QFDLSANFKD  360
ARPTTQLDCA RTGKDSADAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	212	KRRRRR
2	207	213	KRRRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	8e-40	bHLH family protein