PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021688769.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

CO-like

Protein Properties

Length: 382aa MW: 41714.3 Da PI: 5.9665

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021688769.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.3	2.4e-06	22	63	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+++ + +C+ ++ +lC+ C + H H++ XP_021688769.1 22 RVCDTCRAAACTVYCRADSAYLCAGCDASVHAAnrvasrHER 63 79****99*******************55566667765 PP
2	zf-B_box	29.6	1.5e-09	64	109	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +++ ++ + C+ + lC C +H+ H++vp+ XP_021688769.1 64 VWVCEACDRAPAAFLCKADAASLCTACDADIHSAnplarrHQRVPI 109 689***************************668999999997 PP
3	CCT	70.3	4.7e-24	313	356	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_021688769.1 313 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 356 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MLKNDDSSDG GGGGGTSNNW ARVCDTCRAA ACTVYCRADS AYLCAGCDAS VHAANRVASR 60 HERVWVCEAC DRAPAAFLCK ADAASLCTAC DADIHSANPL ARRHQRVPIL PISGCVYGPQ 120 VAPAAGETTE DMLTTQEGEE GVGDEEEDEA ASWLLLNPMK NSNGQNNNGF MFGGGEVDEY 180 LDLVEYNSNS CGDQNKYSDQ NNLQHYSVPH QKSCYGGDSV VPVQCAEAVG KDQLHQRYHN 240 FHLGLEFDSS KAAYSHNGSI SQTVSISSMD VGVVPDSTMS ETSILHSRPP KGTIDLFSSP 300 PMQMPSQYSP RAREARVLRY REKKKTRKFE KTIRYASRKA YAETRPRIKG RFAKRTDVEV 360 EVDQLFSTTL MAEAGYGIVP SY

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MLKNDDSSDG GGGGGTSNNW ARVCDTCRAA ACTVYCRADS AYLCAGCDAS VHAANRVASR  60
HERVWVCEAC DRAPAAFLCK ADAASLCTAC DADIHSANPL ARRHQRVPIL PISGCVYGPQ  120
VAPAAGETTE DMLTTQEGEE GVGDEEEDEA ASWLLLNPMK NSNGQNNNGF MFGGGEVDEY  180
LDLVEYNSNS CGDQNKYSDQ NNLQHYSVPH QKSCYGGDSV VPVQCAEAVG KDQLHQRYHN  240
FHLGLEFDSS KAAYSHNGSI SQTVSISSMD VGVVPDSTMS ETSILHSRPP KGTIDLFSSP  300
PMQMPSQYSP RAREARVLRY REKKKTRKFE KTIRYASRKA YAETRPRIKG RFAKRTDVEV  360
EVDQLFSTTL MAEAGYGIVP SY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-111	CO-like family protein