PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021687623.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C2H2

Protein Properties

Length: 535aa MW: 55459.4 Da PI: 8.5487

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021687623.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.3e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_021687623.1 63 FVCEICSKGFQRDQNLQLHRRGH 85 89*******************88 PP
2	zf-C2H2	11.1	0.0012	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_021687623.1 139 WKCDKCSKKYAVQSDWKAHSKIC 161 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
MPVDLDNSST ASGEASVSSS GNQPPPPKLT ATGKKKRNLP GMPDPDAEVI ALSPKALLAT 60 NRFVCEICSK GFQRDQNLQL HRRGHNLPWK LRQRSSKEVK KRVYVCPEPT CVHHDPSRAL 120 GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYKCDC GTLFSRRDSF 180 ITHRAFCDAL AEESARTQTQ TPTPASNLPA VNPKPNPESE PNMQVDPSPP PPPPPPQPPV 240 APAPPALSQP AGVISSAVSP THGPDLPDNP TPIIEEARAR APAPAPAPAP TLAPALAGLN 300 GSCSSSTSSS SNGSSSSSVF ASLFASSTAS GSLQPPQTPA FTDLIRAMAH PDHPAGLAPP 360 STEPISLCLS SNHGSSIFGT AGQERRQYAP PPQPAMSATA LLQKAAQMGA ASTNASFLRG 420 LGIVSSSSSS SQQDNMPWGH GQVEPENTSV TAGLGLGLHC DGGSGLKELM MGTPSVFGPK 480 QTTLDFLGLG MAAGGSPSSG LSALITSIGS GLDVAAAAAS FGGGEFTGKD MGRSS

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

MPVDLDNSST ASGEASVSSS GNQPPPPKLT ATGKKKRNLP GMPDPDAEVI ALSPKALLAT  60
NRFVCEICSK GFQRDQNLQL HRRGHNLPWK LRQRSSKEVK KRVYVCPEPT CVHHDPSRAL  120
GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYKCDC GTLFSRRDSF  180
ITHRAFCDAL AEESARTQTQ TPTPASNLPA VNPKPNPESE PNMQVDPSPP PPPPPPQPPV  240
APAPPALSQP AGVISSAVSP THGPDLPDNP TPIIEEARAR APAPAPAPAP TLAPALAGLN  300
GSCSSSTSSS SNGSSSSSVF ASLFASSTAS GSLQPPQTPA FTDLIRAMAH PDHPAGLAPP  360
STEPISLCLS SNHGSSIFGT AGQERRQYAP PPQPAMSATA LLQKAAQMGA ASTNASFLRG  420
LGIVSSSSSS SQQDNMPWGH GQVEPENTSV TAGLGLGLHC DGGSGLKELM MGTPSVFGPK  480
QTTLDFLGLG MAAGGSPSSG LSALITSIGS GLDVAAAAAS FGGGEFTGKD MGRSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-111	C2H2 family protein