PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021687366.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 323aa MW: 36766.9 Da PI: 6.6427 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.7 | 3.4e-12 | 186 | 211 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd CkF+H+ XP_021687366.1 186 YQPDICKDYKETGYCGYGDACKFMHD 211 67789********************7 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 323 aa Download sequence |
MADSGESQQP EPVCNFFRKP LKNKNIRKRI IEEDEDEDSK NESSLLHNQK KAPKPDNKLF 60 FSSGPSKSSM STESDVESDR KIFQFESSKE IQVQHDSRAT ATLETETEFS KDARAIRERA 120 LKQAEEALKG KNPSSGNEKL YKGIHGYTDH KAGFRREQTI SSEKAGGAHG PLRASAHIRV 180 SARFDYQPDI CKDYKETGYC GYGDACKFMH DRGDYKPGWQ LEKEWEEAEK IRKRNLALGE 240 DEGGVEQSDE EEDDDDDSLP FACFICRQPF VDPVVTKCKH YFCEHCALKH HAKNKKCFVC 300 NQPTLGIFNT AHEIRKKMAA EGK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-154 | C3H family protein |