PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021686558.1
Organism
Hevea brasiliensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25611.3 Da    PI: 9.6744
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021686558.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey++
  XP_021686558.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYCN 59
                    79***********************************************95 PP
2K-box109.83e-36771743100
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +s+++s +e +a+++qqe+akL+++i++Lq+++Rhl+G++L+sL++keL+qLe++Le+++++iRskK+elll++ie+lqk+e el++e  +Lr+k
  XP_021686558.1  77 SSNTSSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHELLLAEIEYLQKREIELENESVCLRTK 171
                     455566999************************************************************************************** PP

           K-box  98 lee 100
                     ++e
  XP_021686558.1 172 IAE 174
                     986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYCNN  60
NSIKSTIERY KKACSDSSNT SSITEINAQY YQQESAKLRQ QIQMLQNSNR HLMGDSLSSL  120
TVKELKQLEN RLERGITRIR SKKHELLLAE IEYLQKREIE LENESVCLRT KIAEIERLQQ  180
ANMVTGAELN AIQALTSRNF FGPHMIEGGT AYSHPDKKIL HLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-123MIKC_MADS family protein