PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021686231.1
Organism
Hevea brasiliensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 27094.4 Da    PI: 9.2564
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021686231.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.13.1e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien   rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  XP_021686231.1  9 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
                    79***********************************************96 PP
2K-box71.32.9e-2482175997
           K-box   9 leeakaeslqqelakLkkeienLq.....reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +++++ ++++++   L k+ie L+     +  R+llG++Le++s+ eLqqLe+qLe+sl++iR++Kn+l++e+ie+l++ ek l eenk+L++k
  XP_021686231.1  82 TSQENLQNMKEDTFSLAKKIELLEvskflEICRKLLGDGLEPCSIDELQQLESQLERSLTRIRTRKNQLFTEKIEKLREEEKILMEENKRLQAK 175
                     68899*******************99888778***********************************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MVRGKTQMKR IENAASRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSC  60
SINKTIERYQ KKAKDLGISI KTSQENLQNM KEDTFSLAKK IELLEVSKFL EICRKLLGDG  120
LEPCSIDELQ QLESQLERSL TRIRTRKNQL FTEKIEKLRE EEKILMEENK RLQAKCGLQP  180
MDLSTTTIKE QHVADRQSME VETELFIGPQ IANRKNMEVG TELFIGPPET RTSFT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.11e-64MIKC_MADS family protein