PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021685570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 505aa MW: 54733.8 Da PI: 8.5392 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.5 | 7.2e-11 | 160 | 184 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_021685570.1 160 GEKDCAHYMLTRTCKFGDSCKFDHP 184 7889********************8 PP | |||||||
2 | zf-CCCH | 35.6 | 1.6e-11 | 212 | 236 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++f++t CkyG++CkF+H+ XP_021685570.1 212 GQPDCPYFLKTQRCKYGSKCKFNHP 236 5799********************8 PP | |||||||
3 | zf-CCCH | 31.1 | 4.1e-10 | 243 | 262 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 f+++tG Ck+G++CkF+H++ XP_021685570.1 243 FYMKTGKCKFGATCKFHHPK 262 9*****************96 PP | |||||||
4 | zf-CCCH | 36.6 | 7.8e-12 | 315 | 340 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ XP_021685570.1 315 PGEVDCPFYLKTGSCKYGATCRYNHP 340 57899********************8 PP | |||||||
5 | zf-CCCH | 40.7 | 4e-13 | 399 | 423 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C+++++tG+Ck+G+rC+F+H+ XP_021685570.1 399 GQTECDYYMKTGECKFGERCRFHHP 423 6789********************8 PP | |||||||
6 | zf-CCCH | 35.3 | 1.9e-11 | 455 | 476 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++t tCkyG++CkF H+p XP_021685570.1 455 CPYYMKTSTCKYGATCKFDHPP 476 ********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence |
MANKLYGYSS SYGAAPPSSA AAAGYTPRSV TDSYLPETVM GRYLGAFSDS DPSKYSVTSM 60 YLTQSEALRY SADRGITSAA ASASSHLAPW TPPPGVDVSA AVEPLIAGIK RSTEVLYHPT 120 IFGAHNSIGQ SEAWYSTNSL AKRSRFESAS NLPIYPQRPG EKDCAHYMLT RTCKFGDSCK 180 FDHPIWVPEG GIPNWKEVPL VATIESLPER LGQPDCPYFL KTQRCKYGSK CKFNHPNDKL 240 ATFYMKTGKC KFGATCKFHH PKDIQILLGQ ENGNTWQTES AVNIDEIAGH FNVANASISL 300 TPALFHNSKG LPIRPGEVDC PFYLKTGSCK YGATCRYNHP HRNAINPPAA AIGHSIVATP 360 AANLNIGVVP AASIFQTLDP RLAHSTLGVG PTVYPQRPGQ TECDYYMKTG ECKFGERCRF 420 HHPIDRSAST AKQAQEQTVK LTLAGLPRRE GAVHCPYYMK TSTCKYGATC KFDHPPPGEV 480 MTIAASHRTS TSTGVDVSGA EAGTP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | C3H family protein |