PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021683821.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 782aa MW: 86629.3 Da PI: 6.2917 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.3e-24 | 156 | 257 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + ++ XP_021683821.1 156 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEN 247 99****************************963.3445679************************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_021683821.1 248 GELRLGIRRA 257 999****996 PP | |||||||
2 | Auxin_resp | 122.2 | 3.8e-40 | 282 | 363 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+st+++F+v+Y+Pras++eFvv+++k++k++ ++v++G+Rfkm+fe++ds+err+sG+++ +sdldp+rWpnSkWr+L XP_021683821.1 282 VANAISTNKMFNVLYSPRASNAEFVVPYKKYMKSIMNPVCIGTRFKMRFEMDDSPERRCSGVITEISDLDPYRWPNSKWRCL 363 689******************************************************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 782 aa Download sequence |
MEIDLNHAVT EAEKYAFCTN GDSSSSSCSS NSSPSPASSS IYLELWHACA GPLTSLPKKG 60 NVVVYFPQGH LEQVASSAPI SPTEMPTFDL QPQIFCKVVN VQLLANKDND EVYTQLTLLP 120 QPELVGQNLE GKGLEDLGVD EEGGGGLPAK STPHMFCKTL TASDTSTHGG FSVPRRAAED 180 CFPPLDYKQQ RPSQELVAKD LHGVEWRFRH IYRGQPRRHL LTTGWSIFVS QKNLVSGDAV 240 LFLRGENGEL RLGIRRAVRP RNGLPDSAIG KQNSYPSILS LVANAISTNK MFNVLYSPRA 300 SNAEFVVPYK KYMKSIMNPV CIGTRFKMRF EMDDSPERRC SGVITEISDL DPYRWPNSKW 360 RCLMVRWDED IGGDHQERVS PWEIDPSVSL PPLSVQSSPR LKKLRTGLSA TPPDNPITGG 420 GGFLDFEESG RSSKVLQGQE NVGFMSPLYG CDTLNRPPDF EMQNSAHQNL VSTGREKANN 480 GEITRARSTT YTGFAESNRF PKVLQGQEIC PMRSLTGKSD FNLGAWGKTN LGCGPFDIYQ 540 APRPNFYPLA AESMQNMYFP YGDLYKTGQD PRMRSYTANF PRENFQFGAS SIQTARDEAG 600 KSNQLNDHKS QETISAPPAL GVNLMNQKDN SFNGTASSCK LFGFSLTVEA TNPNSQNSGK 660 RSCTKVHKQG SLVGRAIDLS RLNGYSDLLG ELERLFSMEG LLRDPNKGWR ILYTDSENDV 720 MVVGDDPWHE FCNVVSKIHI YTQDEVEKMT ICDDTQSCLD QAYVVMEASK SSSVGQPDFS 780 PQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | ARF family protein |