PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021681109.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C2H2

Protein Properties

Length: 533aa MW: 58515.4 Da PI: 9.6855

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021681109.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.3e-05	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_021681109.1 65 FICEICNKGFQRDQNLQLHRRGH 87 89*******************88 PP
2	zf-C2H2	11.6	0.00089	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_021681109.1 141 WKCEKCSKKYAVQSDWKAHGKIC 163 58*****************8876 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MMSEDGFSVP SSTFRGFVHQ EPTPNPNPNP TTNSVKKRRN LPGTPDPDAE VIALSPKSLM 60 ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLKQRSTKE VRKKVYICPE KSCVHHDPTR 120 ALGDLTGIKK HYSRKHGEKK WKCEKCSKKY AVQSDWKAHG KICGTREYRC DCGTLFSRKD 180 SFITHRAFCD ALAEESARFT SVSAAINANF RNDLINGAPN SNPHQSTGIS QFSSVLRPEF 240 AAGSELVGDI SIVDGQKQRL PIWLDHANPQ MSPIGVANNS NAFLASNSAC LPEFVHTAQM 300 NMFGSASSQA QWLNKYQEAQ LTGGSNLSMS ALPRGLKEEE GNTGDLSESL TSLYSSNQHQ 360 QQKNSAHMSA TALLQKAAQM GSTKSNPAFS TGNGISLMSS PSLSNATSFN TYDQSKSKET 420 LKFLSRQPNQ AAENFNELAH SLSPSNPATF LGESNSNTIL GTTSTTSKNL NHLMMQANRK 480 QNHGSSSEIE GSLTRDFLGV GGETRRPFLQ KELAKFASIS SGMDLSQYSS GHR

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MMSEDGFSVP SSTFRGFVHQ EPTPNPNPNP TTNSVKKRRN LPGTPDPDAE VIALSPKSLM  60
ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLKQRSTKE VRKKVYICPE KSCVHHDPTR  120
ALGDLTGIKK HYSRKHGEKK WKCEKCSKKY AVQSDWKAHG KICGTREYRC DCGTLFSRKD  180
SFITHRAFCD ALAEESARFT SVSAAINANF RNDLINGAPN SNPHQSTGIS QFSSVLRPEF  240
AAGSELVGDI SIVDGQKQRL PIWLDHANPQ MSPIGVANNS NAFLASNSAC LPEFVHTAQM  300
NMFGSASSQA QWLNKYQEAQ LTGGSNLSMS ALPRGLKEEE GNTGDLSESL TSLYSSNQHQ  360
QQKNSAHMSA TALLQKAAQM GSTKSNPAFS TGNGISLMSS PSLSNATSFN TYDQSKSKET  420
LKFLSRQPNQ AAENFNELAH SLSPSNPATF LGESNSNTIL GTTSTTSKNL NHLMMQANRK  480
QNHGSSSEIE GSLTRDFLGV GGETRRPFLQ KELAKFASIS SGMDLSQYSS GHR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	104	KLKQRSTKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-102	C2H2 family protein