PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021680570.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C2H2

Protein Properties

Length: 445aa MW: 48748.3 Da PI: 7.6011

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021680570.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.1e-05	52	74	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H XP_021680570.1 52 YICEVCHKGFQRDQNLQLHRRGH 74 89*******************88 PP
2	zf-C2H2	13.2	0.00026	128	150	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + XP_021680570.1 128 WKCDKCSKRYAVQSDWKAHTKIC 150 58*****************9987 PP
3	zf-C2H2	11.2	0.0012	158	176	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + XP_021680570.1 158 DCGTIFSRKDSFVTHRAFC 176 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MSNVAPEFED EEQFQCTVVS QSSNGSPNPT ENDPDAEVVA LSPRTLMATN RYICEVCHKG 60 FQRDQNLQLH RRGHNLPWKL KQRPNTQVKK RVYVCPEPTC VHHDPSRALG DLTGIKKHFC 120 RKHGEKKWKC DKCSKRYAVQ SDWKAHTKIC GTREYRCDCG TIFSRKDSFV THRAFCDALA 180 EENYKANQNL ATTGGILQSQ VQELFNSSTP SSDSCSKKSS MMNLTISDEN IDGSRRPLSL 240 NSTGIMVSSN LIPTLNPRTS IACFNSADGS NISPMAMGSA FTSATALLQK AAEMGAKVSD 300 NSIAPILLRG FSGFSASSMN SSGSAQEGSS LVGSNTAANM NSMCVGDTET FDNNFDPGYS 360 RNGYTISQTG LFESTLNMRS ENRNASNSLG GEAYMGRGEK MTLDFLGVEP TGHTTMGKKQ 420 NYEGNIMGLG YSNVHQNLNN LDSDW

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MSNVAPEFED EEQFQCTVVS QSSNGSPNPT ENDPDAEVVA LSPRTLMATN RYICEVCHKG  60
FQRDQNLQLH RRGHNLPWKL KQRPNTQVKK RVYVCPEPTC VHHDPSRALG DLTGIKKHFC  120
RKHGEKKWKC DKCSKRYAVQ SDWKAHTKIC GTREYRCDCG TIFSRKDSFV THRAFCDALA  180
EENYKANQNL ATTGGILQSQ VQELFNSSTP SSDSCSKKSS MMNLTISDEN IDGSRRPLSL  240
NSTGIMVSSN LIPTLNPRTS IACFNSADGS NISPMAMGSA FTSATALLQK AAEMGAKVSD  300
NSIAPILLRG FSGFSASSMN SSGSAQEGSS LVGSNTAANM NSMCVGDTET FDNNFDPGYS  360
RNGYTISQTG LFESTLNMRS ENRNASNSLG GEAYMGRGEK MTLDFLGVEP TGHTTMGKKQ  420
NYEGNIMGLG YSNVHQNLNN LDSDW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-110	C2H2 family protein