PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021675903.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 323aa MW: 36577.3 Da PI: 7.443 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 6e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++ +G g+W+++++ g+ R++k+c++rw +yl XP_021675903.1 13 RGLWSPEEDEKLIKFITTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E++ ++d ++ lG++ W+ Ia++++ gRt++++k++w++ XP_021675903.1 66 RGSFTAQEEKTIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89********************.*********.***********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 323 aa Download sequence |
MGHQCCSKQK VKRGLWSPEE DEKLIKFITT HGHGSWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGSFT AQEEKTIIDI HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL 120 DPNTHKLLSP NYKQNYNNNI ACRPSADSHY QPTFSSSVFT VSSQMKDFSM DVKKTPFTPS 180 IPSPDANYFC LHPLHISSTI TTCCVHQNSN IQAFLDCASQ SVTMGSNPIS CSTSNPSGAG 240 IIEEKCLWSG DIESTQTLRH EQMQVEQVVE IEKTNELNAG QNMDALFESS NFDFDFVECT 300 QMPEMYYSVR PIDQLTWDSQ ALQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12720.1 | 1e-82 | MYB family protein |