PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021675842.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

CO-like

Protein Properties

Length: 392aa MW: 43099.4 Da PI: 5.9845

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021675842.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.1	2.6e-06	2	43	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 e+ C+ +e +++ +C++++ lC +C H+ H+ XP_021675842.1 2 EPLCEFCEVMRAIVYCKSDSARLCLQCDGFVHSAnslsrrHS 43 689****99**************999995456666666 PP
2	zf-B_box	18.7	3.6e-06	46	73	4	31
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedCll 31 C+++++++ +l C d++ +C+ C XP_021675842.1 46 LLCDKCNSQPSILRCLDDKLSICQACDW 73 68************************75 PP
3	CCT	62.8	1.1e-21	336	379	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ XP_021675842.1 336 RDKAKMRYHEKKKTRMFGKQIRYASRKARADTRKRVKGRFVKAG 379 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MEPLCEFCEV MRAIVYCKSD SARLCLQCDG FVHSANSLSR RHSRSLLCDK CNSQPSILRC 60 LDDKLSICQA CDWNNANGCS SLGHRLQALS CYTGRPSLAE FSRIWSSVLE ASPPATTSNY 120 DPSGLGTSLS VIPQDPNSIL YCRDQKSGLP EESNMPKGCS IFKDLEIQDV QDLCEGINMD 180 YVALNFENGD EIFGCSQGHT RYQPRDVGKD CILMEKNLSV TESNNGPVEN AIEVTSSGQQ 240 DCITFQSPQV VSSASAIQAM NGSTSSLFMN PSCNRSINLG FPTGTAQVHS SISLSLSNIT 300 GESSAADYQD CGLSPVFLAS ESPWGLNMET SCPQARDKAK MRYHEKKKTR MFGKQIRYAS 360 RKARADTRKR VKGRFVKAGE AYDYDPLVTE DF

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MEPLCEFCEV MRAIVYCKSD SARLCLQCDG FVHSANSLSR RHSRSLLCDK CNSQPSILRC  60
LDDKLSICQA CDWNNANGCS SLGHRLQALS CYTGRPSLAE FSRIWSSVLE ASPPATTSNY  120
DPSGLGTSLS VIPQDPNSIL YCRDQKSGLP EESNMPKGCS IFKDLEIQDV QDLCEGINMD  180
YVALNFENGD EIFGCSQGHT RYQPRDVGKD CILMEKNLSV TESNNGPVEN AIEVTSSGQQ  240
DCITFQSPQV VSSASAIQAM NGSTSSLFMN PSCNRSINLG FPTGTAQVHS SISLSLSNIT  300
GESSAADYQD CGLSPVFLAS ESPWGLNMET SCPQARDKAK MRYHEKKKTR MFGKQIRYAS  360
RKARADTRKR VKGRFVKAGE AYDYDPLVTE DF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	1e-103	CO-like family protein