PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021675598.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

CO-like

Protein Properties

Length: 360aa MW: 40775.9 Da PI: 4.9378

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021675598.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.6	1.9e-06	17	58	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r C+++++ + +l+C+ ++++lC++C ++H H++ XP_021675598.1 17 RSCDTCHSAPCTLYCHADSTYLCHSCDAYIHAAdpmasqHKR 58 68*****************************66777777775 PP
2	zf-B_box	31.2	4.5e-10	58	104	2	42
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C+ +e+ ++ + C+ ++ lC +C e+H+ H++vp+ XP_021675598.1 58 RVWVCTACENAPAAFTCQADEANLCINCDIEIHSAnplsrrHNRVPV 104 5689*****************************66899999999986 PP
3	CCT	61.2	3.4e-21	296	339	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+e rk RkFeKkirY++RKa+Ae+RpRvKGrF++++ XP_021675598.1 296 REARVQRYRERRKARKFEKKIRYATRKANAENRPRVKGRFARKT 339 9****************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MWKVCSEGDG YPSNWARSCD TCHSAPCTLY CHADSTYLCH SCDAYIHAAD PMASQHKRVW 60 VCTACENAPA AFTCQADEAN LCINCDIEIH SANPLSRRHN RVPVLPISTT YVEEFQGSLL 120 KTENEAQANK STVELEEDET DSWLLLDLDD NDSQTNSGFT NGKDVDEYLD VIEYNLCTEY 180 QCQDHSDQQQ LSGVHQGDSG SDSVVPVQSF EPKDQQDHQQ QQQQNILVDS WYESSKAAVI 240 NTTASNQKVP APYMNAGYSL TTSNIPNSYS RFPNGTTDLL PNTSLLMPLQ FTPPNREARV 300 QRYRERRKAR KFEKKIRYAT RKANAENRPR VKGRFARKTD MEFEVTEDYG YGIVPSYQVK

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MWKVCSEGDG YPSNWARSCD TCHSAPCTLY CHADSTYLCH SCDAYIHAAD PMASQHKRVW  60
VCTACENAPA AFTCQADEAN LCINCDIEIH SANPLSRRHN RVPVLPISTT YVEEFQGSLL  120
KTENEAQANK STVELEEDET DSWLLLDLDD NDSQTNSGFT NGKDVDEYLD VIEYNLCTEY  180
QCQDHSDQQQ LSGVHQGDSG SDSVVPVQSF EPKDQQDHQQ QQQQNILVDS WYESSKAAVI  240
NTTASNQKVP APYMNAGYSL TTSNIPNSYS RFPNGTTDLL PNTSLLMPLQ FTPPNREARV  300
QRYRERRKAR KFEKKIRYAT RKANAENRPR VKGRFARKTD MEFEVTEDYG YGIVPSYQVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15850.1	4e-63	CO-like family protein