PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021674599.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | LSD | ||||||||
Protein Properties | Length: 178aa MW: 18792.7 Da PI: 8.3249 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.1 | 3e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGA +V+CalC+++ XP_021674599.1 7 CSGCRNILLYPRGAANVCCALCNAI 31 ***********************97 PP | |||||||
2 | zf-LSD1 | 39.3 | 1.1e-12 | 50 | 73 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C gCrt L+Y rGA+sVRC++C+t XP_021674599.1 50 CLGCRTWLMYSRGATSVRCSCCHT 73 99*********************9 PP | |||||||
3 | zf-LSD1 | 49.2 | 8.6e-16 | 88 | 112 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V XP_021674599.1 88 CGNCRTTLMYPYGAPSVKCAICQYV 112 ***********************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence |
MQSQLQCSGC RNILLYPRGA ANVCCALCNA ITSAPPPPPP LGMEMAQLIC LGCRTWLMYS 60 RGATSVRCSC CHTTNPAPVS SQVAHINCGN CRTTLMYPYG APSVKCAICQ YVSNVSMANV 120 RVPLPANRPN GATGMIPSTS TSTPHSQTQT VVVENPMSVD ESGNLVSNVV VGVTTERK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 4e-61 | LSD family protein |