PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021670383.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | LSD | ||||||||
Protein Properties | Length: 102aa MW: 10591.4 Da PI: 7.5986 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.1 | 6.9e-14 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V XP_021670383.1 28 CSGCRNLLLYPVGATSVCCAVCNAV 52 ************************9 PP | |||||||
2 | zf-LSD1 | 47.3 | 3.2e-15 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ XP_021670383.1 67 CGGCHTLLMYIRGATSVQCSCCHTI 91 ***********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence |
MPVPLAPYPT PPAPYTQPAN GAQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT INLALEGINK HY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 9e-35 | LSD family protein |