PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021670382.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | LSD | ||||||||
Protein Properties | Length: 123aa MW: 12948.2 Da PI: 7.9187 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.6 | 9.5e-14 | 6 | 30 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V XP_021670382.1 6 CSGCRNLLLYPVGATSVCCAVCNAV 30 ************************9 PP | |||||||
2 | zf-LSD1 | 46.9 | 4.5e-15 | 45 | 69 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ XP_021670382.1 45 CGGCHTLLMYIRGATSVQCSCCHTI 69 ***********************97 PP | |||||||
3 | zf-LSD1 | 42.2 | 1.3e-13 | 83 | 107 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V XP_021670382.1 83 CGNCRMLLMYQYGARSVKCAVCNFV 107 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence |
MSQLVCSGCR NLLLYPVGAT SVCCAVCNAV TAVPPPGTEM AQLVCGGCHT LLMYIRGATS 60 VQCSCCHTIN LALEANQVAH VNCGNCRMLL MYQYGARSVK CAVCNFVTSV GASTSTTEQK 120 FNI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 1e-68 | LSD family protein |