PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021669448.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 748aa MW: 80820.5 Da PI: 6.5917

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021669448.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	327	347	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_021669448.1 327 PCPDFRK-GACRRGDMCEYAHG 347 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence
MCGGPDRSSK SSAPSPSAGD TTRNTKDMNH LTVETGDTFS SLLDLAANND IEGFKRLIEQ 60 DASSVDEVAY WYGRQKGSKN IVLDHRTPLM VAATYGSVDV LKFLLTDTDA DVNLSCGMDK 120 TTALHCAASG GSLNAVDAVK LLLSAGACAN CLDVNGYRPI DVIVVPPKPH GMRVALEELL 180 SNSVSSVSLG EHNCNGSVGE HSSNGFVGGC NLRVSISTSD TSSRTLSSSS ENGSPPSPSV 240 LVSSPVASKY NDLPTMTISE KKEYPIDPSL PDIKNSVYAT DEFRMYSFKV RPCSRAYSHD 300 WTECPFVHPG ENARRRDPRK FHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT 360 RLCKDGTSCN RRVCFFAHAP EELRPLYVST GSAVPSPRSS ASAASVMDMA AAFSLLPGSP 420 SSVSAMSPTP FNPPMSPAAS TIPHSSVAWP QPNVPTLHLP LSNLQSSRLR SSLSARDIRP 480 EDLNLLPDFD AQQQILNDLT CFSESRNNSV SLNRSGRSKV LTPSNLEELF SAEISSPRFA 540 DQAAAVFSPT HKSAVLNQFQ QQQSMLSPIN TSVFSPKNVE HTLLQASFGV GSPGRMSPRS 600 LEPISPMGSR LSAFAQREKQ HQQLRSLSSR DLGSNNPAAS MVGSPVNSWT KWGSPNGKFD 660 LSVGGGNERG HLQRSSSFEL GNNGDEPDLS WVQSLVKESP PEMIKEKYGV PVSGAALSGE 720 GFPNSQIDCV LESWLEQMQL DQQQQLVV

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence

MCGGPDRSSK SSAPSPSAGD TTRNTKDMNH LTVETGDTFS SLLDLAANND IEGFKRLIEQ  60
DASSVDEVAY WYGRQKGSKN IVLDHRTPLM VAATYGSVDV LKFLLTDTDA DVNLSCGMDK  120
TTALHCAASG GSLNAVDAVK LLLSAGACAN CLDVNGYRPI DVIVVPPKPH GMRVALEELL  180
SNSVSSVSLG EHNCNGSVGE HSSNGFVGGC NLRVSISTSD TSSRTLSSSS ENGSPPSPSV  240
LVSSPVASKY NDLPTMTISE KKEYPIDPSL PDIKNSVYAT DEFRMYSFKV RPCSRAYSHD  300
WTECPFVHPG ENARRRDPRK FHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT  360
RLCKDGTSCN RRVCFFAHAP EELRPLYVST GSAVPSPRSS ASAASVMDMA AAFSLLPGSP  420
SSVSAMSPTP FNPPMSPAAS TIPHSSVAWP QPNVPTLHLP LSNLQSSRLR SSLSARDIRP  480
EDLNLLPDFD AQQQILNDLT CFSESRNNSV SLNRSGRSKV LTPSNLEELF SAEISSPRFA  540
DQAAAVFSPT HKSAVLNQFQ QQQSMLSPIN TSVFSPKNVE HTLLQASFGV GSPGRMSPRS  600
LEPISPMGSR LSAFAQREKQ HQQLRSLSSR DLGSNNPAAS MVGSPVNSWT KWGSPNGKFD  660
LSVGGGNERG HLQRSSSFEL GNNGDEPDLS WVQSLVKESP PEMIKEKYGV PVSGAALSGE  720
GFPNSQIDCV LESWLEQMQL DQQQQLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-166	C3H family protein