PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021665935.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 200aa MW: 22635.5 Da PI: 5.7519 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.4 | 2.5e-20 | 20 | 68 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie ksn qvtfskRr+g+ KKA+ELS L +a+vavi fs+ k++ + XP_021665935.1 20 KPIEAKSNLQVTFSKRRAGLVKKASELSLLSGAQVAVIAFSPGKKVFAF 68 68****************************************9999877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MVTTNKHQKR TKGRQKIEIK PIEAKSNLQV TFSKRRAGLV KKASELSLLS GAQVAVIAFS 60 PGKKVFAFGH PNVDTVLDCY LNEGFDTKEE DPVTSSNNPH VQQWNREYEE AVKELEEEKK 120 CLAMIQEWNK VRESNVNAGF WWDDSIDDMG VEELEEYVRA MKELRRNVGT RANELMMANH 180 FGNQNIGSAL GGFGLGDEPF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-38 | M-type_MADS family protein |