PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021654810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 449aa MW: 48659.9 Da PI: 7.6066 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.9 | 2.5e-11 | 55 | 81 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H+p XP_021654810.1 55 PGEPDCVYYLRTGLCGYGSNCRFNHPP 81 5789*********************97 PP | |||||||
2 | zf-CCCH | 36.4 | 8.5e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ XP_021654810.1 98 QPDCGYYLKTGTCKYGSTCKYHHPR 122 789********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 8.1e-12 | 144 | 167 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ XP_021654810.1 144 KSCPYYLRTGSCKFGVACKFHHPQ 167 66********************97 PP | |||||||
4 | zf-CCCH | 37.5 | 3.9e-12 | 286 | 311 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ +GtCkyG+ Ck++H++ XP_021654810.1 286 DQPECRYFMNNGTCKYGSDCKYHHPK 311 689*********************96 PP | |||||||
5 | zf-CCCH | 35.3 | 1.9e-11 | 331 | 357 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++ +G+Ck+G++C+F H++ XP_021654810.1 331 PGQPICSNYSMYGICKFGPTCRFDHPF 357 5789*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence |
MPDNSNNNNS NRQVKSNAVP NQSPDNIEDA IWRLKIHDNQ EQGGMAPSST YPDRPGEPDC 60 VYYLRTGLCG YGSNCRFNHP PAAQGTQFRE ELPERAGQPD CGYYLKTGTC KYGSTCKYHH 120 PRDRNGAGPV SFNILGLPMR QDEKSCPYYL RTGSCKFGVA CKFHHPQPAP LGAGLPLTEP 180 AGSGPMGSST APSSGLPYVG GLPTWSLVRA PYVSGPRLQG PQAYMPVVLS PTQGVFPAQG 240 WNTYVGNLSP LSSASVLGSN LVYNSRNQGD SGSRSTTNTN LPERPDQPEC RYFMNNGTCK 300 YGSDCKYHHP KERIAQIATN PVGPAGLPSR PGQPICSNYS MYGICKFGPT CRFDHPFPGY 360 PYSYSLSLQP VSIFDSSLLT YPRMSPPALS SESPVSLSSK FPDWVQNPDG ASNKHPNSDT 420 NIKISDDQPE QAGSPPPHSS QDSSEPSHD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-118 | C3H family protein |