PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021652402.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

M-type_MADS

Protein Properties

Length: 370aa MW: 40372.1 Da PI: 7.0187

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021652402.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	37	4.4e-12	11	52	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ r+ ++ kRr g+lKK +EL +LC++ + ii+s++ XP_021652402.1 11 IVNDAARKASLKKRRIGLLKKVSELTTLCGVSAFAIIYSPDE 52 669999*********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MTRKKVKLVW IVNDAARKAS LKKRRIGLLK KVSELTTLCG VSAFAIIYSP DEREPMLWPS 60 RPVVQQLLMR YQTMPEIERC KKMMNQESYL KERIAKVQEQ FRKHQRKNRE IELACLMDRL 120 HQGNGVDDFE VNELQGLIWL LEEKMKDIRK RVEYFQQVPP LPPGPFPLAP PLPLSPHGGP 180 IMEQMGHQFG GGGSGGDIMR DNPTDAMVWD QWFVDMMNNS ENIAGSSSGT KNEQGHHPQG 240 FNITGIPGGD GGGLDMGLVH PGNFGDSSAG NIIGLGLPQG NMNMGVTPFD LGVPPHHGNP 300 FGLGLQPYEN FTGSSSANAM GPGLTAAPPS NTTGGSSTGS ELGLPGFFTG GSDIGLPYDV 360 TKPWPQNFSP

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MTRKKVKLVW IVNDAARKAS LKKRRIGLLK KVSELTTLCG VSAFAIIYSP DEREPMLWPS  60
RPVVQQLLMR YQTMPEIERC KKMMNQESYL KERIAKVQEQ FRKHQRKNRE IELACLMDRL  120
HQGNGVDDFE VNELQGLIWL LEEKMKDIRK RVEYFQQVPP LPPGPFPLAP PLPLSPHGGP  180
IMEQMGHQFG GGGSGGDIMR DNPTDAMVWD QWFVDMMNNS ENIAGSSSGT KNEQGHHPQG  240
FNITGIPGGD GGGLDMGLVH PGNFGDSSAG NIIGLGLPQG NMNMGVTPFD LGVPPHHGNP  300
FGLGLQPYEN FTGSSSANAM GPGLTAAPPS NTTGGSSTGS ELGLPGFFTG GSDIGLPYDV  360
TKPWPQNFSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RKKVKLVWIVNDAARKASLKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-37	M-type_MADS family protein