PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021649928.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

RAV

Protein Properties

Length: 365aa MW: 40514.6 Da PI: 9.5193

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021649928.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.8	6.4e-14	65	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g XP_021649928.1 65 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 113 89**9888.8*****3.....5******99***********98 PP
2	B3	102.9	1.8e-32	198	298	1	96
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+ tpsdv+k++rlv+pk++ae++ g+++++++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ ++ XP_021649928.1 198 FEKAVTPSDVGKLNRLVIPKQHAEKYfplqsGSNSTKGVLLNFEDITGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGPDK 292 89***************************99999**************************************************8766777 PP ..EEEE CS B3 91 elvvkv 96 +l++ + XP_021649928.1 293 QLYIDW 298 677665 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MDGSCTDEST ATSDSISISP TSAVSPFPPP TKFPESPLCR VGSGSSVILD SESGVEAESR 60 KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA ARAYDIAAQR FRGRDAITNF 120 KPQGAEIEDD DIETAFLNSH SKAEVVDMLR KHTYNDELEQ SKRNYRIDGQ GKQHRNPGAN 180 NVALSGSGRV LKEREQLFEK AVTPSDVGKL NRLVIPKQHA EKYFPLQSGS NSTKGVLLNF 240 EDITGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLKAGD IVSFQRSTGP DKQLYIDWKV 300 KTGSNSLVCS VKPVQILRLF GVNIFKVPGN SGVAEGAGGC NGKRTREMEL LSLECIKKQR 360 IIGAL

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MDGSCTDEST ATSDSISISP TSAVSPFPPP TKFPESPLCR VGSGSSVILD SESGVEAESR  60
KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA ARAYDIAAQR FRGRDAITNF  120
KPQGAEIEDD DIETAFLNSH SKAEVVDMLR KHTYNDELEQ SKRNYRIDGQ GKQHRNPGAN  180
NVALSGSGRV LKEREQLFEK AVTPSDVGKL NRLVIPKQHA EKYFPLQSGS NSTKGVLLNF  240
EDITGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLKAGD IVSFQRSTGP DKQLYIDWKV  300
KTGSNSLVCS VKPVQILRLF GVNIFKVPGN SGVAEGAGGC NGKRTREMEL LSLECIKKQR  360
IIGAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-157	RAV family protein