PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021648833.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 212aa MW: 23822.2 Da PI: 9.6978 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.3 | 1.7e-22 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+ ks qvtfskRr+g++KKA+EL++LC++e+a+i+fs+ +k + + XP_021648833.1 16 KISKKSHLQVTFSKRRAGLFKKASELCTLCGVEIAIIVFSPANKAFSF 63 799***************************************997766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MVKRSSLGRQ KIAMEKISKK SHLQVTFSKR RAGLFKKASE LCTLCGVEIA IIVFSPANKA 60 FSFGHPEVES ILERFLARNP PPTSGAHQII EAHRNANVRE LNAQLTHILN QLEQERKQAE 120 EFKQITKSSQ SHCWWEAPVH DLGLHELETL RDALEELKKS VTKQANKILV EPKNSSPFLA 180 ANGIGHVSDY ESKVNELNFA SSATSYVKNF GY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-58 | M-type_MADS family protein |