PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021646972.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

HB-PHD

Protein Properties

Length: 1001aa MW: 110227 Da PI: 4.9539

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021646972.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.1	2.9e-13	824	867	9	52
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + +++L ++F++n+yp+++++e LAk+l++t rqV+ WF N R XP_021646972.1 824 EAVTQRLYKCFKENQYPDRATKESLAKELDITFRQVSKWFENAR 867 567899************************************99 PP
2	PHD	37.1	7.1e-13	466	521	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ + +++++lCdg C++ fH+ Cl ++l +e++p + wlC+ C++k XP_021646972.1 466 FCAKCGSkdLTVDNDIILCDGaCDRGFHQFCLVPPLLKEDIPPDdeGWLCPGCDCK 521 699*965555****66***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1001 aa Download sequence
MFKAKRMGIS PSQVSCHTKS YSCPKQSTSE ETPEYGAECK HTEISEQKHQ IMSETVQTEP 60 GDTNTVVSQS GASEALQQSS DDAMKNSLTE NLEAPSEDAC KSSLTDKSLG PKPTAIDQKL 120 EFVSEDTCNG PSKEQYSLGS GIIQNHNALS TITVNENLQL LSEDAAKNSL TNDLELPHED 180 ARESSQVGKS PCSQQSMPEQ TLEFSSDSAC CEPSVERGKA CLDIVKGELL KISTPLSSCT 240 ATRHFEPPPA LVAKSSIICL GLPRVSEINV PATEKLRPSH DDMDKHSNLE QSETPSKDTV 300 SNSSRVGWRV KRTAKSRKKY ILRSLVRSDR VLQSRSQEKP KAPDFSANLA NVSSKKEKTR 360 QKKKKRQGMR IEADEYSKIR KHLRYLLNRM SYEQSLIAAY SAEGWKGLSL EKLKPEKELQ 420 RATSEIFRRK LKIRDLFQRI DSLCVEGKLP ESLFDSEGQI SSEDIFCAKC GSKDLTVDND 480 IILCDGACDR GFHQFCLVPP LLKEDIPPDD EGWLCPGCDC KVDCIELLND CQGTNISISD 540 SWEKVFPEAA TAGQNPDQNF GLPSDDSDDN DYDPDGPEID EKSQGDESSS DESDFTSVSD 600 ELEASPGDKQ NLGLPSDDSE DDDYDPDGPD LDENVKEESS SSDFTSDSDD LATSLHNKEL 660 SGEHENRVSI GPQGDIIREG SKHSGKKKQY SELLSILEPS PSQDGSAPIS GRRNVERLNY 720 KKLYDETYGN VSSDSSDDED FTDTVGPRKR RRSTEVAPAS VNGDASVTKT GKQDLEGTEY 780 APKSCLQSNC ENTSISPAKS QEGSSPSSFC GRTVKRSVYR RLGEAVTQRL YKCFKENQYP 840 DRATKESLAK ELDITFRQVS KWFENARWSF NHSSSMDALV RKTSEKDSPL PKTNSKPLER 900 GHETVGGDAT SNGAQSEKSP KIGNATAESN MGDARDAKLG SQEGSKRKSK ILKSRKRKDI 960 SGQISSRTDS MTEETEKLPA NLPKAQETQA SGRVTRSKSV A

Sequence ? help Back to Top

Protein Sequence Length: 1001 aa Download sequence

MFKAKRMGIS PSQVSCHTKS YSCPKQSTSE ETPEYGAECK HTEISEQKHQ IMSETVQTEP  60
GDTNTVVSQS GASEALQQSS DDAMKNSLTE NLEAPSEDAC KSSLTDKSLG PKPTAIDQKL  120
EFVSEDTCNG PSKEQYSLGS GIIQNHNALS TITVNENLQL LSEDAAKNSL TNDLELPHED  180
ARESSQVGKS PCSQQSMPEQ TLEFSSDSAC CEPSVERGKA CLDIVKGELL KISTPLSSCT  240
ATRHFEPPPA LVAKSSIICL GLPRVSEINV PATEKLRPSH DDMDKHSNLE QSETPSKDTV  300
SNSSRVGWRV KRTAKSRKKY ILRSLVRSDR VLQSRSQEKP KAPDFSANLA NVSSKKEKTR  360
QKKKKRQGMR IEADEYSKIR KHLRYLLNRM SYEQSLIAAY SAEGWKGLSL EKLKPEKELQ  420
RATSEIFRRK LKIRDLFQRI DSLCVEGKLP ESLFDSEGQI SSEDIFCAKC GSKDLTVDND  480
IILCDGACDR GFHQFCLVPP LLKEDIPPDD EGWLCPGCDC KVDCIELLND CQGTNISISD  540
SWEKVFPEAA TAGQNPDQNF GLPSDDSDDN DYDPDGPEID EKSQGDESSS DESDFTSVSD  600
ELEASPGDKQ NLGLPSDDSE DDDYDPDGPD LDENVKEESS SSDFTSDSDD LATSLHNKEL  660
SGEHENRVSI GPQGDIIREG SKHSGKKKQY SELLSILEPS PSQDGSAPIS GRRNVERLNY  720
KKLYDETYGN VSSDSSDDED FTDTVGPRKR RRSTEVAPAS VNGDASVTKT GKQDLEGTEY  780
APKSCLQSNC ENTSISPAKS QEGSSPSSFC GRTVKRSVYR RLGEAVTQRL YKCFKENQYP  840
DRATKESLAK ELDITFRQVS KWFENARWSF NHSSSMDALV RKTSEKDSPL PKTNSKPLER  900
GHETVGGDAT SNGAQSEKSP KIGNATAESN MGDARDAKLG SQEGSKRKSK ILKSRKRKDI  960
SGQISSRTDS MTEETEKLPA NLPKAQETQA SGRVTRSKSV A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	748	752	RKRRR
2	748	753	RKRRRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	8e-93	HB-PHD family protein