PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021645596.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 212aa MW: 24740.8 Da PI: 9.1926 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.5 | 1.1e-15 | 11 | 52 | 9 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 r+ f kR++++ KKAeELS LC++ v++i + ++gk+ +++ XP_021645596.1 11 RKAIFRKRKETLKKKAEELSSLCGVPVCLICYQPDGKIDTWP 52 666799***********************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MNRNNGPLTP RKAIFRKRKE TLKKKAEELS SLCGVPVCLI CYQPDGKIDT WPEDKKEVDD 60 ILMKYTREEN INLQPAVGFL DAENNNQASV VIKNENRKEK KEKKKKKVFE TWDTRLDNLP 120 EESLMDILTV LEEKEEILEE RILQPKQIHE IKDFLLTARR KDARSVKIKR SKDVVKFKVC 180 CSKYLYTLCV FDSEKADKLK QSLPLGLSVQ DL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41200.1 | 2e-12 | M-type_MADS family protein |