PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021643936.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | LBD | ||||||||
Protein Properties | Length: 300aa MW: 32236.4 Da PI: 7.9162 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101 | 1.1e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+ XP_021643936.1 4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQA 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l ++ XP_021643936.1 99 AVEAVLKGT 107 **9988765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence |
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGTPIT PINSEAAANG 120 HGPPLKAYDI RHVSKDENSA ASNDPNRVKA RCRVRRAVKP KVSNNKQSGG AGFGSAVEPA 180 RDDLTRSTSH ESTVSHQSEL AMVDGDSKES ESMVSVETAE ASLLFRAEPE SAAKSNEGVQ 240 DHASTEMAGL GLELTLGLEP LSRASHVVPV KKRKLEAYGY GSSDDESCKI ELGLDCPARH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-100 | LBD family protein |