PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021641676.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 26409.8 Da PI: 9.1148 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.2 | 1.4e-18 | 64 | 117 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++q e Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k XP_021641676.1 64 KKKRLTNDQSESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 117 45679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.4 | 8.2e-38 | 63 | 154 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+++q+++LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+ Lk+++d ++ e+++L++ev +L+ l+ XP_021641676.1 63 EKKKRLTNDQSESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDELKQEFDVVSVEKQKLQEEVMKLKGILQ 154 69*************************************************************************************97776 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence |
MDWHGNLRTF VSRPENSFNF LYNYSFDQYN NQGMDVKHPA AMAKTPRAIV PAMEKLSYGN 60 IYEKKKRLTN DQSESLERSF QEEIKLDPDR KMKLSRELGL QPRQIAVWFQ NRRARWKAKQ 120 LERLYDELKQ EFDVVSVEKQ KLQEEVMKLK GILQEQATKK QVSKGYTDIS GEETVESTWV 180 GIRSSGEKPR GTSHQHQIAE CNYHLNVDEY NPVTSPYWAV LPSYP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 64 | 93 | KKKRLTNDQSESLERSFQEEIKLDPDRKMK |
2 | 112 | 120 | RRARWKAKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03790.1 | 4e-55 | HD-ZIP family protein |