PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021641091.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 277aa MW: 30884.6 Da PI: 9.6289 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.3 | 3.1e-09 | 53 | 77 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt lC f+ G+C+yG++C++aHg XP_021641091.1 53 FKTQLCAKFRL-GYCSYGSKCSYAHG 77 69*********.*************8 PP | |||||||
2 | zf-CCCH | 22.2 | 2.5e-07 | 115 | 135 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr f+ +C yGd+C+F H+ XP_021641091.1 115 CRMFYSRKECTYGDKCRFLHV 135 5555555*************6 PP | |||||||
3 | zf-CCCH | 33.9 | 5.4e-11 | 176 | 201 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k ++C+++ rtG C+yG C+FaHg+ XP_021641091.1 176 KKRPCNNWERTGSCPYGKICCFAHGQ 201 789*********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence |
MLQLRPQFPI ENKEYQDLSQ NGDPLCKIPR TCEIAAPCPK MPVATNNAVT GSFKTQLCAK 60 FRLGYCSYGS KCSYAHGSDE LRKRLPNVQA PVVNEVGLSR TWNGFYRAVD PSNLCRMFYS 120 RKECTYGDKC RFLHVSPDNI KRELGACRES LSIRTGTTGF SGFHRSGCAS SKPVIKKRPC 180 NNWERTGSCP YGKICCFAHG QAELEKPIGR IGLFSGFVPT NTSKTLPISK NVIGTSYQLQ 240 VRGMKCAFKK RAAQKISGIY ADWIEDMPSL YDSLNKA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 3e-31 | C3H family protein |