PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021639474.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 469aa MW: 51683.4 Da PI: 5.5026 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.9 | 3.2e-06 | 2 | 42 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 e+ C+ ++ ++ +C++++ lC +C H+ H XP_021639474.1 2 EPLCEFCGTVRAVVYCKSDSARLCLQCDGFVHSAnslsrrH 42 689******99****************98888544555555 PP | |||||||
2 | zf-B_box | 21.5 | 4.7e-07 | 46 | 73 | 4 | 31 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedCll 31 C+++++++++l C d++ +C++C XP_021639474.1 46 LLCDKCNSQPAILRCLDDKLSICQTCDW 73 57************************75 PP | |||||||
3 | CCT | 41.6 | 4.4e-15 | 428 | 456 | 16 | 44 |
CCT 16 kFeKkirYesRKavAesRpRvKGrFvkqa 44 +F K+irY+sRKa+A++R+RvKGrFvk+ XP_021639474.1 428 RFGKQIRYASRKARADTRKRVKGRFVKAG 456 69************************985 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 469 aa Download sequence |
MEPLCEFCGT VRAVVYCKSD SARLCLQCDG FVHSANSLSR RHPRSLLCDK CNSQPAILRC 60 LDDKLSICQT CDWNNANGCS SLGHRLQALS CYTGRPSLVE FSRIWSSVLD ASPSTTTSYD 120 PAELGTSLAS LPGNENSMIS SCLKHEDNEG CFGLLTSKLN ELEPWMGPPT VDPLGPNSIP 180 YCRDQVSLLP EDSNMPKGCC NFKDLEIHDN EDLCEGLNMD DVALMNFENG DEIFGCPQGH 240 TRYQLGDVGK DCILMEKNLS VTESNNGPVE NAREVTSSGQ QDCITFQSPQ VACSAGMMQA 300 MNGSTSCLFM NPSCNRSINL GFPTGTGQVH SSISLSLSNI TGESSAADYQ DCGLSPVFLA 360 SESPWELNLE TSCPQARDKA KMRYNEKKKT RTYVCDSTPI TFQVIVCISR GFQLVGSDRF 420 CKIVMFYRFG KQIRYASRKA RADTRKRVKG RFVKAGEAYD YDPLVPRNF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21880.1 | 2e-97 | CO-like family protein |