PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021301235.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

LBD

Protein Properties

Length: 318aa MW: 35052.2 Da PI: 7.4136

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021301235.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.1	6.1e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp ++p+kfanvhk+FGasnv kll++l+ ++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l XP_021301235.1 7 PCAACKFLRRKCTQECVFAPYFPPDNPQKFANVHKVFGASNVAKLLNELNASQREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQMQHDLY 101 7********************************************************************************************99 PP DUF260 96 llkee 100 +k+e XP_021301235.1 102 NAKKE 106 98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DNPQKFANVH KVFGASNVAK LLNELNASQR 60 EDAVNSLAYE AEARLRDPVY GCVGLISILQ HRLKQMQHDL YNAKKELSTF IGPQAMLPIL 120 QPPAFLPQHV GNPSSSAVMQ HNMMPMMGIP TAAAVAAAAS HVGQLAIREP QQQQQQIFEA 180 QQQLAAAAAA REQQEMFRGY EQQHHQGQQQ EIVRFNSGFE GAGSVTATGF NQMTTAATMS 240 PSLALGSFDN PYQIQTQQQD HHHHSHGGHS LQAQLLLQPQ QVQPQQPAQQ NQQQQAQQNQ 300 QQQQQRSGSE EGRSIGPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-88	LBD family protein