PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021300288.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TCP

Protein Properties

Length: 264aa MW: 27141.8 Da PI: 9.2842

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021300288.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	102.6	6.9e-32	29	115	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.k 89 +kk +++++hT + R+R+++ caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ ++++s + + XP_021300288.1 29 VKKPPSKDRHTQSRWSWPRIRMPIICAARVFQLTRELGHXSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSVRGGANSTSlS 115 79*****************************************************************9777.3333333333333321 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MSNSEGGATN GXIMDPQRQQ APGNGXLVVK KPPSKDRHTQ SRWSWPRIRM PIICAARVFQ 60 LTRELGHXSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST VSVSVRGGAN STSLSSTTSS 120 SSLDHKPLLG PTPFILGKRV RADDDNAGKD DSGGVXAGPG VGSIVGPAGT PTGGFWAVPX 180 QADFGQVWSF APPPPPEMVV QTAAAAAAAA AATTAAAALF VQQQQAMGEA SAXRVGNYLP 240 GHLNLLASLS GAPGGSGRRD EDPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-59	TCP family protein