PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021300128.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 508aa MW: 56243.7 Da PI: 6.8735

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021300128.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	8.4e-07	262	283	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_021300128.1 262 FCTICGKGFKRDANLRMHMRGH 283 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MDLKERLSGE LQKKVPEHPS FPNFNTQHQQ KWEDPSILDY STRIEPPFHV FSQTSQTQSS 60 LPRNPNNQIK VRGQDGPVNE TLLSNKVQDW DPSAMLNNLS FLEQKIHQLQ ELVHLIVGRR 120 GQVLGRPDEL VAQQQQLITA DLTSIIVQLI STAGSLLPSV KHTLSAASPS IGQFGQFGGV 180 VFPSGQGQNG GVQPQSAGGS RISEQPNSFD VSSNGGNEQN HIIEEHELKD EEDVEEGENL 240 LPGTYEILQL EKEEILAPHT HFCTICGKGF KRDANLRMHM RGHGDEYKTP AALAKPNKES 300 SSEPTLIKRY SCPYAGCKRN KDHKKFQPLK TILCVKNHYK RTHCDKSYTC SRCNTKKFSV 360 IADLKTHEKH CGKDKWLCSC GTTFSRKDKL FGHITLFQGH TPAIPLDENK GSAGPSDHRG 420 DSNQAINKVG SMNFNFSSNV SSEGGVQSSV DVKGGIDDPA GYFSPLNFDT CNFGGFHEFP 480 RPPFDDSENS FAFLLSGSCS YSQKSGED

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MDLKERLSGE LQKKVPEHPS FPNFNTQHQQ KWEDPSILDY STRIEPPFHV FSQTSQTQSS  60
LPRNPNNQIK VRGQDGPVNE TLLSNKVQDW DPSAMLNNLS FLEQKIHQLQ ELVHLIVGRR  120
GQVLGRPDEL VAQQQQLITA DLTSIIVQLI STAGSLLPSV KHTLSAASPS IGQFGQFGGV  180
VFPSGQGQNG GVQPQSAGGS RISEQPNSFD VSSNGGNEQN HIIEEHELKD EEDVEEGENL  240
LPGTYEILQL EKEEILAPHT HFCTICGKGF KRDANLRMHM RGHGDEYKTP AALAKPNKES  300
SSEPTLIKRY SCPYAGCKRN KDHKKFQPLK TILCVKNHYK RTHCDKSYTC SRCNTKKFSV  360
IADLKTHEKH CGKDKWLCSC GTTFSRKDKL FGHITLFQGH TPAIPLDENK GSAGPSDHRG  420
DSNQAINKVG SMNFNFSSNV SSEGGVQSSV DVKGGIDDPA GYFSPLNFDT CNFGGFHEFP  480
RPPFDDSENS FAFLLSGSCS YSQKSGED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein