PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299524.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 337aa MW: 37845.8 Da PI: 6.431

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299524.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.7e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++l++ ++ +G g+W+++++ g+ R++k+c++rw +yl XP_021299524.1 13 RGLWSPEEDDKLIKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	56.5	6.2e-18	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++ XP_021299524.1 66 RGSFTAEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MGHRCCSKQK VKRGLWSPEE DDKLIKHITA HGHGSWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGSFT AEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLLSQGL 120 DPKTHNLLSS RQRASNKLAC HSSSQTQEQS FTVFNMSSQN RDAPRVMMKA PVLTLPEPPP 180 PPDQVHRSMA MQIPFSECQS PNFVGTGYGQ NPNESAIFPY GSSVESTIIS SSPSSIPLPG 240 FNNLLDENPC IWEANAFVET FEAPTVEGIH AQEQPQQEKE KICDMAIDKI DEAREEVHEM 300 DASFDSCSFD LGLLESTLIS AAMCRDLSSM DDFAWNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	1e-86	MYB family protein