PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021298910.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NF-X1

Protein Properties

Length: 1087aa MW: 118112 Da PI: 7.9465

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021298910.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	23.3	1.3e-07	280	298	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+ +CH GpC+pC+ XP_021298910.1 280 CGRHRCELICHVGPCDPCQ 298 ******************6 PP
2	zf-NF-X1	18.7	3.8e-06	344	361	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C ++CH+GpC+ C XP_021298910.1 344 CGNHNCAEICHPGPCGDC 361 ****************99 PP
3	zf-NF-X1	17.3	1.1e-05	498	516	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC XP_021298910.1 498 CGHHSCESLCHSGHCPPCL 516 ******************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1087 aa Download sequence
MSKSETMSFQ GRNRPRNPSQ STRQEWVPRG SSSTTTTVVS SSPGTSNSTP IFNHTSTRND 60 NRYRQIGRST NHRRDKEKER SENHVVVKEI DPNLPQLVQE IQDKLIKSTV ECMICYDTVR 120 RSAPIWSCSS CYSIFHLNCI KKWARAPTSV DLVVEKNQGI NWRCPGCQFV QLTSSKEIRY 180 VCFCGKRTDP PSDLYLTPHS CGEPCGKPLE KVLGLGAGVM KDELCPHVCV LQCHPGPCPP 240 CKAFSPPRLC PCGKKVITTR CSDRQSVLTC GQCCDKLLEC GRHRCELICH VGPCDPCQVP 300 INAPCFCRKK VEAVICGDMA VKGEVKTEDG VFSCSSTCGN KLRCGNHNCA EICHPGPCGD 360 CELMPSKIKS CYCGKTSLQE KRQSCLDPIP TCSEVCAKFL PCRVHQCDQL CHSGDCPACS 420 VLVTQKCRCG STSRRVECYK TTLENERFTC DKPCGRKKNC GRHRCSERCC PLSNSNNLPS 480 GDWDPHFCQM ACGKKLRCGH HSCESLCHSG HCPPCLETIF TDLACACGRT SIPPPLPCGT 540 PPPSCQLPCS VPQACGHSSS HSCHFGDCPP CSVPVAKECI GGHVVLRNIP CGSKDIRCNK 600 LCGKTRQCGL HACGRTCHLA PCDMSSGSEP GFRTSCGQTC GASRRDCRHT CTAPCHPSAS 660 CPDVRCDSRV TITCSCGRIA ATVPCDAGGS TSSFNADTVY EASIIQKLPV PLQPVDSTGK 720 KIPLGQRKLM CDDECAKLDR KRVLADAFDI SSPNLDAFHF GENSVTSELL SDLYRRDAKW 780 VLAIEERCKF LVLGKNRGTA TGLKIHVFCP MLKDKRDAVK IIAERWKLAV SAAGWEPKRF 840 IVVHVTPKSK PPPRIIGVKG ATGVGALHPP VFDTLVDMDP RLVVSFLDLP READISALVL 900 RFGGECELVW LNDKNALAVF SDPARAATAM RRLDHGSVYY GVVIFVQNAG ASVASTANNA 960 WGGAGQNSAL KGNPWKKAVV EELGWREDSW GDEESFGGTS DLGSVWKGKE TPIAASINRW 1020 SVLDSETGVS SSSRTVQTED LSNPAGVLSN SGMDSNTADS NSAGLPGGGF NEPEPLEVVD 1080 DWEKAYE

Sequence ? help Back to Top

Protein Sequence Length: 1087 aa Download sequence

MSKSETMSFQ GRNRPRNPSQ STRQEWVPRG SSSTTTTVVS SSPGTSNSTP IFNHTSTRND  60
NRYRQIGRST NHRRDKEKER SENHVVVKEI DPNLPQLVQE IQDKLIKSTV ECMICYDTVR  120
RSAPIWSCSS CYSIFHLNCI KKWARAPTSV DLVVEKNQGI NWRCPGCQFV QLTSSKEIRY  180
VCFCGKRTDP PSDLYLTPHS CGEPCGKPLE KVLGLGAGVM KDELCPHVCV LQCHPGPCPP  240
CKAFSPPRLC PCGKKVITTR CSDRQSVLTC GQCCDKLLEC GRHRCELICH VGPCDPCQVP  300
INAPCFCRKK VEAVICGDMA VKGEVKTEDG VFSCSSTCGN KLRCGNHNCA EICHPGPCGD  360
CELMPSKIKS CYCGKTSLQE KRQSCLDPIP TCSEVCAKFL PCRVHQCDQL CHSGDCPACS  420
VLVTQKCRCG STSRRVECYK TTLENERFTC DKPCGRKKNC GRHRCSERCC PLSNSNNLPS  480
GDWDPHFCQM ACGKKLRCGH HSCESLCHSG HCPPCLETIF TDLACACGRT SIPPPLPCGT  540
PPPSCQLPCS VPQACGHSSS HSCHFGDCPP CSVPVAKECI GGHVVLRNIP CGSKDIRCNK  600
LCGKTRQCGL HACGRTCHLA PCDMSSGSEP GFRTSCGQTC GASRRDCRHT CTAPCHPSAS  660
CPDVRCDSRV TITCSCGRIA ATVPCDAGGS TSSFNADTVY EASIIQKLPV PLQPVDSTGK  720
KIPLGQRKLM CDDECAKLDR KRVLADAFDI SSPNLDAFHF GENSVTSELL SDLYRRDAKW  780
VLAIEERCKF LVLGKNRGTA TGLKIHVFCP MLKDKRDAVK IIAERWKLAV SAAGWEPKRF  840
IVVHVTPKSK PPPRIIGVKG ATGVGALHPP VFDTLVDMDP RLVVSFLDLP READISALVL  900
RFGGECELVW LNDKNALAVF SDPARAATAM RRLDHGSVYY GVVIFVQNAG ASVASTANNA  960
WGGAGQNSAL KGNPWKKAVV EELGWREDSW GDEESFGGTS DLGSVWKGKE TPIAASINRW  1020
SVLDSETGVS SSSRTVQTED LSNPAGVLSN SGMDSNTADS NSAGLPGGGF NEPEPLEVVD  1080
DWEKAYE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein