PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021298589.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

SBP

Protein Properties

Length: 486aa MW: 53274.5 Da PI: 8.0842

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021298589.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.7	1.3e-41	188	264	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+v gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+ XP_021298589.1 188 CQVEGCNLDLSSAKDYHRKHRVCESHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQT 264 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MSSISLMEWN AKTSLQWDWE NLMMFNSTPT EIPRKLRPIE WDIDGEGGME SGSLYSSGAA 60 GGSGGSGSDL GLASLSKSSK SASINSSSMG EIKVTKFSLE ALEASPDDII NKKEVSKVEL 120 TGTSPTLEAS VGSGEPLLSL KLGKRTYFED VCAGSNAKNS SRSATPAPSP TTAKRSKPNC 180 QSTHVPHCQV EGCNLDLSSA KDYHRKHRVC ESHSKSPKVI VGGLERRFCQ QCSRFHGLSE 240 FDEKKRSCRR RLSDHNARRR KPQTEAVHFN AARLTSSSYD GKPQMGFVWN KVPFLHARPN 300 EGFTWEGTFD SKSSQMKGFT PTKVGNVNGQ LQLPGNQLLN SITMRCHDSS RFLPTKGKHN 360 TGEVLNQVLP NIAGVEEPTL TSNMGTTQDL HRALSLLSND SWISCEPKHG SLAYSIHANP 420 TSTSQPVMNV ISQGFPCALS ENWQMEQQTT ESQVQTTLHG DADNHFQEFQ LLKASYDGGF 480 YSNQMN

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MSSISLMEWN AKTSLQWDWE NLMMFNSTPT EIPRKLRPIE WDIDGEGGME SGSLYSSGAA  60
GGSGGSGSDL GLASLSKSSK SASINSSSMG EIKVTKFSLE ALEASPDDII NKKEVSKVEL  120
TGTSPTLEAS VGSGEPLLSL KLGKRTYFED VCAGSNAKNS SRSATPAPSP TTAKRSKPNC  180
QSTHVPHCQV EGCNLDLSSA KDYHRKHRVC ESHSKSPKVI VGGLERRFCQ QCSRFHGLSE  240
FDEKKRSCRR RLSDHNARRR KPQTEAVHFN AARLTSSSYD GKPQMGFVWN KVPFLHARPN  300
EGFTWEGTFD SKSSQMKGFT PTKVGNVNGQ LQLPGNQLLN SITMRCHDSS RFLPTKGKHN  360
TGEVLNQVLP NIAGVEEPTL TSNMGTTQDL HRALSLLSND SWISCEPKHG SLAYSIHANP  420
TSTSQPVMNV ISQGFPCALS ENWQMEQQTT ESQVQTTLHG DADNHFQEFQ LLKASYDGGF  480
YSNQMN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	261	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	1e-88	SBP family protein