PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021298071.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

ARF

Protein Properties

Length: 671aa MW: 74463.9 Da PI: 6.1796

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021298071.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.8	1.8e-22	124	224	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+++ +++ ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + + XP_021298071.1 124 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 214 99**************************964333..4459********************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_021298071.1 215 NGELRVGVRR 224 999***97 PP
2	Auxin_resp	112.7	3.4e-37	250	332	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+s+F+v+Y+Pr+s+seF+v+v+k+++a +k+svGmRfkm+fe+e+++err+sGt++gv d +++ W +S+WrsLk XP_021298071.1 250 ASHAIATGSMFSVFYKPRTSRSEFIVSVNKYLEARGHKLSVGMRFKMRFEGEEVPERRFSGTIIGVGDNKSSGWDDSEWRSLK 332 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence
MAFAAPSAEK QAGIKDGPLY QELWHACAGP LVTLPREGER VYYFPQGHME QLEASMHQGL 60 EHQMPSFNLP SKILCKVASV QRKAEPDTDE VYAQITLVPE VDQSEVTSSD PPLPEPERCI 120 VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH GNEWHFRHIF 180 RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGENGELRV GVRRLMRQQT NMPSSVISSH 240 SMHLGVLATA SHAIATGSMF SVFYKPRTSR SEFIVSVNKY LEARGHKLSV GMRFKMRFEG 300 EEVPERRFSG TIIGVGDNKS SGWDDSEWRS LKVQWDEPSS ILRPDRVSPW ELDPLVATNT 360 SSNSQPAQRN KRARPPVLPT PSSDLSSLGM WKSSVESPAF SYCDSQRGHS SPKFSSTAKL 420 NSVGFSGNCS VAAVSSNSMY WSNRVESVTE SFAPVVNKES CERKQGTGNG CRLFGIQLDN 480 VNMEETSPVA TVSGTVVDDR LVLLVDADSD QLSDPSNLNR SDLPSVSCDP EKSCLRSPQE 540 SQSKQIRSCT KVHMQGMVVG RAVDLTRFDC YEDLLRKLEE MFDIKGQLSG SARNWQVVYT 600 DDESDMMMVG DDPWIEFCSM VRKIFILTSE EVKKLSPEIK LPANDDSKPA KPGVDTVVNT 660 DDRSSVVSPG C

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence

MAFAAPSAEK QAGIKDGPLY QELWHACAGP LVTLPREGER VYYFPQGHME QLEASMHQGL  60
EHQMPSFNLP SKILCKVASV QRKAEPDTDE VYAQITLVPE VDQSEVTSSD PPLPEPERCI  120
VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH GNEWHFRHIF  180
RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGENGELRV GVRRLMRQQT NMPSSVISSH  240
SMHLGVLATA SHAIATGSMF SVFYKPRTSR SEFIVSVNKY LEARGHKLSV GMRFKMRFEG  300
EEVPERRFSG TIIGVGDNKS SGWDDSEWRS LKVQWDEPSS ILRPDRVSPW ELDPLVATNT  360
SSNSQPAQRN KRARPPVLPT PSSDLSSLGM WKSSVESPAF SYCDSQRGHS SPKFSSTAKL  420
NSVGFSGNCS VAAVSSNSMY WSNRVESVTE SFAPVVNKES CERKQGTGNG CRLFGIQLDN  480
VNMEETSPVA TVSGTVVDDR LVLLVDADSD QLSDPSNLNR SDLPSVSCDP EKSCLRSPQE  540
SQSKQIRSCT KVHMQGMVVG RAVDLTRFDC YEDLLRKLEE MFDIKGQLSG SARNWQVVYT  600
DDESDMMMVG DDPWIEFCSM VRKIFILTSE EVKKLSPEIK LPANDDSKPA KPGVDTVVNT  660
DDRSSVVSPG C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	0.0	ARF family protein