PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021297606.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 401aa MW: 43570.3 Da PI: 6.1911

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021297606.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl XP_021297606.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.8	9.1e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_021297606.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPVTHKPKS DALLSTDGQS KNAANLSHMA QWESARLEAE ARLVRESKLR SNSLQHQLNP 180 PGYAPSASAS ASASTSAAQL VNKTAWNSGW TKSSEGNTGV LNSTGLGAAG DLESPTSTLT 240 FSENAPPIMS TGLGVSSMPM IEFVGTTSGS SDTGIIKEEG EQDWKGLGSS SNLPEYKDGM 300 ENSLSFTSSL HDMTISMEGG WTPESLRPNN GLVNVGNVMD EGFTNLLLND SMDRSLSDSG 360 KESDEHSGGS GDGSDYYEDN KNYWNSILNL VNSSPSDSPM F

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPKS DALLSTDGQS KNAANLSHMA QWESARLEAE ARLVRESKLR SNSLQHQLNP  180
PGYAPSASAS ASASTSAAQL VNKTAWNSGW TKSSEGNTGV LNSTGLGAAG DLESPTSTLT  240
FSENAPPIMS TGLGVSSMPM IEFVGTTSGS SDTGIIKEEG EQDWKGLGSS SNLPEYKDGM  300
ENSLSFTSSL HDMTISMEGG WTPESLRPNN GLVNVGNVMD EGFTNLLLND SMDRSLSDSG  360
KESDEHSGGS GDGSDYYEDN KNYWNSILNL VNSSPSDSPM F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-126	MYB family protein