PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021297555.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TCP

Protein Properties

Length: 366aa MW: 40372.8 Da PI: 8.3045

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021297555.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.8	2.3e-35	48	190	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa. 95 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++ +++ + s+s++ +++++++ XP_021297555.1 48 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPVPPGNFSLNHQMVLSTSQEAGASQSNKEGi 142 689****************************************************************99977777777775555533333332 PP TCP 96 kskksqksaasalnlakesr...........akarararertrekmriknkl 136 k+++s + + + sr ak+++ +re t+ek + ++++ XP_021297555.1 143 KTSSSVNWED----PGGLSRssfwssdafwrAKSKEAERETTNEKDNWNKRN 190 3333333222....222222223444555559999******999988655 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MITSSKEADS PTRQEGNTND TKVNKGPSSS SPWLRLKDPR IVRVSRAFGG KDRHSKVCTI 60 RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA AKHEIDELPP LPVPPGNFSL 120 NHQMVLSTSQ EAGASQSNKE GIKTSSSVNW EDPGGLSRSS FWSSDAFWRA KSKEAERETT 180 NEKDNWNKRN EEEKQEGSEG HHGAQVSSDS LLQRANHSSL PALLNNAVPY GSYYHFEPSN 240 FPLSHLGSHG FGSHAEDLHN FNVVPLPSTL SLSSGSQILV CPPGATQPLF PPHATASLEI 300 DPRQQVNHFQ MLSSGAQNLL PNSLNPPPYA ISQSIRPFHL SMNPRLPHSH NSSGSQPDKQ 360 QEFPSK

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MITSSKEADS PTRQEGNTND TKVNKGPSSS SPWLRLKDPR IVRVSRAFGG KDRHSKVCTI  60
RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA AKHEIDELPP LPVPPGNFSL  120
NHQMVLSTSQ EAGASQSNKE GIKTSSSVNW EDPGGLSRSS FWSSDAFWRA KSKEAERETT  180
NEKDNWNKRN EEEKQEGSEG HHGAQVSSDS LLQRANHSSL PALLNNAVPY GSYYHFEPSN  240
FPLSHLGSHG FGSHAEDLHN FNVVPLPSTL SLSSGSQILV CPPGATQPLF PPHATASLEI  300
DPRQQVNHFQ MLSSGAQNLL PNSLNPPPYA ISQSIRPFHL SMNPRLPHSH NSSGSQPDKQ  360
QEFPSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.2	4e-54	TCP family protein