PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296849.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 342aa    MW: 37906.4 Da    PI: 7.6089
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296849.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF404.9e-131150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+  r  ++ kRr g+lKK +ELS+LC+++++ ii + 
  XP_021296849.1 11 IANDNARRLSLKKRRLGLLKKISELSTLCGVNACAIICGL 50
                    8999*********************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MTRKKVKLEW IANDNARRLS LKKRRLGLLK KISELSTLCG VNACAIICGL DEIEPTVWPS  60
HDMVQQQLAQ FQSLSELERL KKTMNQETYL KEQVKKAREQ QMKYEKRNME LEMAQLMYQI  120
NQGKGLDELN LSELNGLSLF VDAKIKEISK RIEFFQQAPF AHTSAFPEPH LSLSPQCLIL  180
NEMAQTSNGK TINGEDWSTP TEPLLWSQCF INSMNKNEPK LASNRSTKSD MGLPYHLLAG  240
SAIDDLWQPI HSLASNFSIA ADMGLPPTNF IPHGASDASL CHGSLVGGSN FGPIRTDIGL  300
GLHPLGGHFR SNTAGSEIGL PHLRHSGGSS SGVGKDIELP FN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLEWIANDNARRLSLKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-26M-type_MADS family protein