PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296716.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 324aa    MW: 35374.3 Da    PI: 6.6835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296716.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.46.8e-10237280755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  XP_021296716.1 237 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 280
                     5679*******************5.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MALAKDPLCS VQTTAFSGNL LGDVSSPEPY KFEGGGGLEK PGGVVKNFSM SSSTSFSSPS  60
SVNSDGLAFR PVNYHPEEVH SLINFKGNGY DNFMNGTNGS LLSFEQNERV LQNTYLKTSS  120
HKDEYSIWGG SLNQNYQWNQ ANPKSSTDPR VVEDFSCFET ASNFNSMTSA TKENHGDWLY  180
SEAAVVADSI QESGSPEAAG LKRPHTGESN QALKKQCSNE ANKAKTKSGP SKDPQSIAAK  240
NRRERISERL KILQELVPNG SKVDLVTMLE KAISYVKFLQ LQVKVLATDE FWPVQGGKAP  300
DISQVREAID AILLSQKDRN SSSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.12e-71bHLH family protein