PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021296244.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Protein Properties

Length: 465aa MW: 52773.9 Da PI: 8.3401

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021296244.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.3	2.8e-18	88	176	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +k ++ps+v+ +l lpk+f+ +h k e+++++lede+g +++ k+ +k++ l++GW++F a++L egD++vF+l+++s+ +v + XP_021296244.1 88 IKYMLPSHVTGGFWLGLPKDFCLKHLPK--EDRMIVLEDEEGIEFQAKYLAEKTG----LSGGWRRFSIAHKLLEGDVCVFHLIKTSKL--KVYI 174 58899******************533..5679***********555555....**********************986666..8888 PP E- CS B3 97 fr 98 +r XP_021296244.1 175 VR 176 77 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MAVSPKQRIS PVKAKRRRPP KIKFFRKKLS GLDKRTPNQF VSLGKEKAQR HKRKRVDDMY 60 ENDEVKSALM ERAVEVQANL SSEFPSLIKY MLPSHVTGGF WLGLPKDFCL KHLPKEDRMI 120 VLEDEEGIEF QAKYLAEKTG LSGGWRRFSI AHKLLEGDVC VFHLIKTSKL KVYIVRSKGS 180 DEVNVALGLL KLESSTEPMD LVKEPKFCEG IRDESLGNYG VEENRICVET TGKSLEVLPL 240 GIYPKTIHNN DPTLSSTNLG PTPYHSENDS EDLGSEVLDG IRLSESIVEF KEVKSIENFK 300 ILANGLIINS ELAKYVQMKY YELCCSQKSF LHDHLLGGLN YKLVAGVIAE TVNIADAIRA 360 AKLTTSHHNF LTWDQTLKSF EGLGMKVGML RSRLDQLMNL SLKAKRYQEA RLEQVHAKEE 420 KRKLEAKLLE VTEALNRLDI EIGSLEEENA DRLELLFQEK ASAPW

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MAVSPKQRIS PVKAKRRRPP KIKFFRKKLS GLDKRTPNQF VSLGKEKAQR HKRKRVDDMY  60
ENDEVKSALM ERAVEVQANL SSEFPSLIKY MLPSHVTGGF WLGLPKDFCL KHLPKEDRMI  120
VLEDEEGIEF QAKYLAEKTG LSGGWRRFSI AHKLLEGDVC VFHLIKTSKL KVYIVRSKGS  180
DEVNVALGLL KLESSTEPMD LVKEPKFCEG IRDESLGNYG VEENRICVET TGKSLEVLPL  240
GIYPKTIHNN DPTLSSTNLG PTPYHSENDS EDLGSEVLDG IRLSESIVEF KEVKSIENFK  300
ILANGLIINS ELAKYVQMKY YELCCSQKSF LHDHLLGGLN YKLVAGVIAE TVNIADAIRA  360
AKLTTSHHNF LTWDQTLKSF EGLGMKVGML RSRLDQLMNL SLKAKRYQEA RLEQVHAKEE  420
KRKLEAKLLE VTEALNRLDI EIGSLEEENA DRLELLFQEK ASAPW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	5e-41	B3 family protein