PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294886.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HB-other

Protein Properties

Length: 1744aa MW: 196690 Da PI: 5.3782

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294886.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	9.1e-19	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t++qle+Le++++ + yps+++r+ L++klgL++rq ++WF+ rR kekk XP_021294886.1 29 PKRQMKTPYQLEALEKAYALETYPSEATRAGLSEKLGLSDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1744 aa Download sequence
MEPGSEEENN PSKNPNKNVN SSNEGHVKPK RQMKTPYQLE ALEKAYALET YPSEATRAGL 60 SEKLGLSDRQ LQMWFCHRRL KEKKETPSKK PRKGAALPPE SPIDDLRAGP EPDYGSGSGS 120 GSGSSPYTDS RKLGGSSSRG MTEDLPMARR YYESHQSIME LRAIACVEAQ LGEPLRDDGP 180 MLGMEFDPLP PDAFGAIPEP QKRSGHPYES KAYERHDGRS SKAVARAFHE YQFLPEHASL 240 RSDAYGQVTQ SHFHESPVDG ARARATSFVH GEEPLPRVHG IQGHGSRVRV LPQPDKTGII 300 PTSSQVADDS LAERESFTNG RLNTQSIGHP VLGSEDSYVL STGQTLNIDA DLRNDRKRKS 360 DENRIAREVE AHENRIRKEL EKLDLKRRKS EERMKKEMER HARERRKEEE RLMREKQREE 420 ERSQREQRRE IERREKFLQK EYLRAEKRRQ KEELRREKEA ERRRVAMEKA TARKIAKESM 480 DLIEDEQLEL MELAAANKGI PSIIQLDHDS LQNLESFRDS LSLFPPKSVQ LKRPFAIQPW 540 IDSEENVGNL LMAWRFLITF ADILRLWPFT LDEFVQGFHD YDSRLLGEIH VALLKSIIKD 600 IEDVARTPST GLGMNQYCAA NPEGGHPQIV EGAYSWGFDI RNWQRHLNPL TWSEIFRQLA 660 ISAGLGPQLK KRNAAWTFMG DNDEGKGCED AVSTLRNGSA AENAFALMRE KGLLLPRRSR 720 HRLTPGTVKF AAFHVLSLEG SKGLTVLELA DKIQKSGLRD LTTSKTPEAS ISVALTRDAK 780 LFERIAPSTY CVRPAYRKDP ADAEAILAAA RKKIRQFENG FLGGEDADEV ERDEVERDED 840 SECDVDEEPE VDDIATPSNA NKDADYPKDE VNTCSGSGKV HVSTDALNVP SEFDKDFSSF 900 PPNIMKDANG PSNTGQYVAR EEIGTGNPDQ QNIEIDESKS GESWIQGLSE GEYSHLSVEE 960 RLNALVALIG IANEGNSIRA VLEDRLEAAN ALKKQMWAEA QLDKSRLKEE TIVKMDFPST 1020 MGIKAEPQLP NSVVEGSQSP FPAAYNKNDE ASPSIPDDQK PLLCPQNVQN DLNSYPAERA 1080 LVLQEASVGP DNFSAQQIGH ASKRSRSQLK SYIAHRAEEM YVYRSLPLGQ DRRRNRYWQF 1140 VASASKNDPC SGWIFVELHD GNWRLIDSEE AFDALWTSLD ARGIRESHLR IMLQKIETSF 1200 KENVRRNLHC ARAIGRSGSS TENEVSELDS SPDFPASFDS PSSAICGLNS DASETLPTFI 1260 IQLGRNENEK KLALKRYQDF HRWIWKECYN SSTLCAMKYG KKRCVQLLAV CDACLGSHIP 1320 EEMHCVYCHQ TFGSINNSFN FSEHEIQCKE NRKLDTKDTY TIDCSLPLGI RLLKSLCALV 1380 EVSIPPEALE SIWTEGHRKM WGRKLNATSS VDELLKILTH LESAIKRDHL LSNFETTKEL 1440 LGSSLLSESD SSDSVLPWIP QTTAAVALRL LELDVSIMYV KQEKVEPSEN KEARAYIKLP 1500 SRTSLFIKNK ELELKELDQD EAMKEENFAD MSHSKRNSYK RGRGGREQGS GRKWRRRASG 1560 SRYDTGKQRA REKNNLSFRL KQQGQRTNGQ SSGRGRRTVR KRGERRAADN TMVARMADVI 1620 KPKANDVRDL DEEWRTEKFR VMQMVNPPDS NSAEEESDDN AQGEGYDQGN WDLDYNGASN 1680 GWNAEAMEAS DEDDDAYEDD NGVEQLGEED SDGDLEISDA SDVVANKAGN DDGSDLAVSE 1740 DYSD

Sequence ? help Back to Top

Protein Sequence Length: 1744 aa Download sequence

MEPGSEEENN PSKNPNKNVN SSNEGHVKPK RQMKTPYQLE ALEKAYALET YPSEATRAGL  60
SEKLGLSDRQ LQMWFCHRRL KEKKETPSKK PRKGAALPPE SPIDDLRAGP EPDYGSGSGS  120
GSGSSPYTDS RKLGGSSSRG MTEDLPMARR YYESHQSIME LRAIACVEAQ LGEPLRDDGP  180
MLGMEFDPLP PDAFGAIPEP QKRSGHPYES KAYERHDGRS SKAVARAFHE YQFLPEHASL  240
RSDAYGQVTQ SHFHESPVDG ARARATSFVH GEEPLPRVHG IQGHGSRVRV LPQPDKTGII  300
PTSSQVADDS LAERESFTNG RLNTQSIGHP VLGSEDSYVL STGQTLNIDA DLRNDRKRKS  360
DENRIAREVE AHENRIRKEL EKLDLKRRKS EERMKKEMER HARERRKEEE RLMREKQREE  420
ERSQREQRRE IERREKFLQK EYLRAEKRRQ KEELRREKEA ERRRVAMEKA TARKIAKESM  480
DLIEDEQLEL MELAAANKGI PSIIQLDHDS LQNLESFRDS LSLFPPKSVQ LKRPFAIQPW  540
IDSEENVGNL LMAWRFLITF ADILRLWPFT LDEFVQGFHD YDSRLLGEIH VALLKSIIKD  600
IEDVARTPST GLGMNQYCAA NPEGGHPQIV EGAYSWGFDI RNWQRHLNPL TWSEIFRQLA  660
ISAGLGPQLK KRNAAWTFMG DNDEGKGCED AVSTLRNGSA AENAFALMRE KGLLLPRRSR  720
HRLTPGTVKF AAFHVLSLEG SKGLTVLELA DKIQKSGLRD LTTSKTPEAS ISVALTRDAK  780
LFERIAPSTY CVRPAYRKDP ADAEAILAAA RKKIRQFENG FLGGEDADEV ERDEVERDED  840
SECDVDEEPE VDDIATPSNA NKDADYPKDE VNTCSGSGKV HVSTDALNVP SEFDKDFSSF  900
PPNIMKDANG PSNTGQYVAR EEIGTGNPDQ QNIEIDESKS GESWIQGLSE GEYSHLSVEE  960
RLNALVALIG IANEGNSIRA VLEDRLEAAN ALKKQMWAEA QLDKSRLKEE TIVKMDFPST  1020
MGIKAEPQLP NSVVEGSQSP FPAAYNKNDE ASPSIPDDQK PLLCPQNVQN DLNSYPAERA  1080
LVLQEASVGP DNFSAQQIGH ASKRSRSQLK SYIAHRAEEM YVYRSLPLGQ DRRRNRYWQF  1140
VASASKNDPC SGWIFVELHD GNWRLIDSEE AFDALWTSLD ARGIRESHLR IMLQKIETSF  1200
KENVRRNLHC ARAIGRSGSS TENEVSELDS SPDFPASFDS PSSAICGLNS DASETLPTFI  1260
IQLGRNENEK KLALKRYQDF HRWIWKECYN SSTLCAMKYG KKRCVQLLAV CDACLGSHIP  1320
EEMHCVYCHQ TFGSINNSFN FSEHEIQCKE NRKLDTKDTY TIDCSLPLGI RLLKSLCALV  1380
EVSIPPEALE SIWTEGHRKM WGRKLNATSS VDELLKILTH LESAIKRDHL LSNFETTKEL  1440
LGSSLLSESD SSDSVLPWIP QTTAAVALRL LELDVSIMYV KQEKVEPSEN KEARAYIKLP  1500
SRTSLFIKNK ELELKELDQD EAMKEENFAD MSHSKRNSYK RGRGGREQGS GRKWRRRASG  1560
SRYDTGKQRA REKNNLSFRL KQQGQRTNGQ SSGRGRRTVR KRGERRAADN TMVARMADVI  1620
KPKANDVRDL DEEWRTEKFR VMQMVNPPDS NSAEEESDDN AQGEGYDQGN WDLDYNGASN  1680
GWNAEAMEAS DEDDDAYEDD NGVEQLGEED SDGDLEISDA SDVVANKAGN DDGSDLAVSE  1740
DYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	85	RRLKEKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	HB-other family protein